View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_33 (Length: 249)
Name: NF3151_1D_low_33
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 4196526 - 4196300
Alignment:
| Q |
7 |
attattcttacgaagcttcactcaattggaacattcatccatgagtattaacagcttcccaaactaaatttctaggaactggtttagtaagatccctcgc |
106 |
Q |
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| T |
4196526 |
attattcttacgaagcttcactcaattggaacattcatccatgagtattaacagcttcccaaactaaatttctaggaactggtttagtaagatccctcgc |
4196427 |
T |
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| Q |
107 |
ctgcaaagccgcattcctcaaagtctgaatagtaagcacattagccttccagaaagacacacaattgtaaggaagattatgtttcttgcacagatcctta |
206 |
Q |
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| T |
4196426 |
ctgcaaagccgcattcctcaaagtctgaatagtaagcacattagccttccagaaagacacacaattgtaaggaagattatgtttcttgcacagatcctta |
4196327 |
T |
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| Q |
207 |
accaaaggtgaaatcttcctcaaatta |
233 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4196326 |
accaaaggtgaaatcttcctcaaatta |
4196300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 4187294 - 4187218
Alignment:
| Q |
60 |
gcttcccaaactaaatttctaggaactggtttagtaagatccctcgcctgcaaagccgcattcctcaaagtctgaat |
136 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| || |||||||| ||||||||||| |||||||| |
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| T |
4187294 |
gcttcccaaactaaatttctcggaatcggtttagtaagatcccgagcttgcaaagcagcattcctcaacgtctgaat |
4187218 |
T |
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