View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_35 (Length: 240)
Name: NF3151_1D_low_35
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 13701627 - 13701849
Alignment:
| Q |
12 |
atgaatcaaaaccactgatccaataatacctcttctcaattgttgccatagaaaaagggtaattagttgatataatataccttacccaattcgcccagat |
111 |
Q |
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| T |
13701627 |
atgaatcaaaaccaccgatccaataatacctcttctcaattgttgccatagaaaaagggtaattagttgatataatataccttacccaattcgcccagat |
13701726 |
T |
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| Q |
112 |
ttatcaagaaggggataattcatgattataaattcaaaaggcaattgataaaacacttatttattcttttcattttgcaattgataaaacaaaaaactcc |
211 |
Q |
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| T |
13701727 |
ttatcaagaaggggataattcatggttataaattcaaaaggcaattgataaaacacttatttattcttttcattttgcaattgataaaacaaaaaactcc |
13701826 |
T |
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| Q |
212 |
aatatgctatcaaaaggcaaatt |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
13701827 |
aatatgctatcaaaaggcaaatt |
13701849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 48939314 - 48939536
Alignment:
| Q |
12 |
atgaatcaaaaccactgatccaataatacctcttctcaattgttgccatagaaaaagggtaattagttgatataatataccttacccaattcgcccagat |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48939314 |
atgaatcaaaaccaccgatccaataatacctcttctcaattgttgccatagaaaaagggtaattagttgatataatataccttacccaattcgcccagat |
48939413 |
T |
|
| Q |
112 |
ttatcaagaaggggataattcatgattataaattcaaaaggcaattgataaaacacttatttattcttttcattttgcaattgataaaacaaaaaactcc |
211 |
Q |
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| T |
48939414 |
ttatcaagaaggggataattcatggttataaattcaaaaggcaattgataaaacacttatttattcttttcattttgcaattgataaaacaaaaaactcc |
48939513 |
T |
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| Q |
212 |
aatatgctatcaaaaggcaaatt |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
48939514 |
aatatgctatcaaaaggcaaatt |
48939536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 31591823 - 31591881
Alignment:
| Q |
176 |
tcttttcattttgcaattgataaaacaaaaaactccaatatgctatcaaaaggcaaatt |
234 |
Q |
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| T |
31591823 |
tcttttcattttgcaattgataaaacaaaaaactccaatatgctatcaaatggcaaatt |
31591881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 31591779 - 31591821
Alignment:
| Q |
87 |
tataccttacccaattcgcccagatttatcaagaaggggataa |
129 |
Q |
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| T |
31591779 |
tatactttacccaattcgcccagatttatcaagaaggggataa |
31591821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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