View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_1D_low_37 (Length: 239)

Name: NF3151_1D_low_37
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_1D_low_37
NF3151_1D_low_37
[»] scaffold0154 (1 HSPs)
scaffold0154 (4-233)||(28103-28335)
[»] chr4 (5 HSPs)
chr4 (103-233)||(55498981-55499116)
chr4 (157-233)||(47335753-47335830)
chr4 (102-166)||(55500972-55501036)
chr4 (155-193)||(22255671-22255709)
chr4 (157-233)||(36013218-36013295)
[»] chr2 (2 HSPs)
chr2 (102-233)||(16044096-16044233)
chr2 (102-166)||(16043379-16043443)
[»] scaffold1956 (1 HSPs)
scaffold1956 (99-166)||(1029-1096)
[»] scaffold0725 (1 HSPs)
scaffold0725 (155-203)||(5828-5876)
[»] chr7 (1 HSPs)
chr7 (146-201)||(23632972-23633027)
[»] chr5 (1 HSPs)
chr5 (165-231)||(17766632-17766699)
[»] chr8 (2 HSPs)
chr8 (155-193)||(5433645-5433683)
chr8 (153-203)||(5873222-5873272)
[»] chr1 (1 HSPs)
chr1 (155-195)||(38150794-38150834)


Alignment Details
Target: scaffold0154 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 28335 - 28103
Alignment:
Q  4 atgaaactaaaaaatgttgatgttctttacaattgaagcttccatctttttggtaggtgaaagctataacaaaaaacttaacttatgattttggatgaca 103  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||    
T  28335 atgaaacgaaaaaatgttaatgttctttacaattgaagcttctatctttttggtaggtgaaagctaaaaccaaaaacttaacttatgatattggatgaca 28236  T
Q  104 tttcacatgagaaggtataaagcttttccaccatgagaa---ttcttttttcaccattagatcaaagaggagcacatattttataatggtctgcccacac 200  Q
    |||||||||||||||||||||||||| || ||||| |||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28235 tttcacatgagaaggtataaagctttcccgccatgggaaagttttttttttcaccattagatcaaagaggagcacatattttataatggtctgcccacac 28136  T
Q  201 tattcatccatcaacattctctctcctccattc 233  Q
    |||||||||||||||||||||||||||||||||    
T  28135 tattcatccatcaacattctctctcctccattc 28103  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 55498981 - 55499116
Alignment:
Q  103 atttcacatgagaaggtataaagcttttccaccatgagaa----ttcttttttcaccattagatcaaagaggagcacatattttataatggtctgcccac 198  Q
    ||||||||||| ||||||||||| |||||||||||| |||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55498981 atttcacatgataaggtataaagtttttccaccatgggaaattttttttttttcaccattagatcaaagaggagcacatattttataatggtctgcccac 55499080  T
Q  199 actat-tcatccatcaacattctctctcctccattc 233  Q
    ||||| |||| |||||||||||||||||||||||||    
T  55499081 actatatcattcatcaacattctctctcctccattc 55499116  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 47335753 - 47335830
Alignment:
Q  157 ttagatcaaagaggagcacatattttataatggtctgcccacactat-tcatccatcaacattctctctcctccattc 233  Q
    |||||| ||||| || |||| ||||||||||||| || ||| ||||| ||||||||||||||| |||||| |||||||    
T  47335753 ttagattaaagaagaacacaaattttataatggtatgtccatactatatcatccatcaacattatctctcttccattc 47335830  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 55501036 - 55500972
Alignment:
Q  102 catttcacatgagaaggtataaagcttttccaccatgagaattcttttttcaccattagatcaaa 166  Q
    ||||| ||||||||||||||||| |||||| |||||| |||   |||||| ||||||||||||||    
T  55501036 cattttacatgagaaggtataaaacttttctaccatgggaaagtttttttgaccattagatcaaa 55500972  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 22255671 - 22255709
Alignment:
Q  155 cattagatcaaagaggagcacatattttataatggtctg 193  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  22255671 cattagattaaagaggagcacatattttatgatggtctg 22255709  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 36013218 - 36013295
Alignment:
Q  157 ttagatcaaagaggagcacatattttataatggtctgcccacactat-tcatccatcaacattctctctcctccattc 233  Q
    |||||| ||||| || |||| ||||||| ||||| || ||| || || |||||||||||||||||||||| |||||||    
T  36013218 ttagattaaagaagaacacaaattttatgatggtatgtccagaccatatcatccatcaacattctctctcttccattc 36013295  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 102 - 233
Target Start/End: Complemental strand, 16044233 - 16044096
Alignment:
Q  102 catttcacatgagaaggtataaagcttttccaccatgagaa-----ttcttttttcaccattagatcaaagaggagcacatattttataatggtctgccc 196  Q
    ||||||||||| || ||||||||||||||||| |||| |||     || ||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  16044233 catttcacatgggagggtataaagcttttccatcatgggaaagttttttttttttcactattacatcaaagaggaacacatattttataatggtctgccc 16044134  T
Q  197 acactat-tcatccatcaacattctctctcctccattc 233  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  16044133 acactatatcatccatcaacattctctctcctccattc 16044096  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 16043379 - 16043443
Alignment:
Q  102 catttcacatgagaaggtataaagcttttccaccatgagaattcttttttcaccattagatcaaa 166  Q
    ||||||||||| |||||||||||||||| ||||||||  ||   |||||| ||||||||||||||    
T  16043379 catttcacatgggaaggtataaagctttcccaccatggaaaagtttttttgaccattagatcaaa 16043443  T

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Target: scaffold1956 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 1029 - 1096
Alignment:
Q  99 tgacatttcacatgagaaggtataaagcttttccaccatgagaattcttttttcaccattagatcaaa 166  Q
    |||||||||||||||||||||||||||||||||||||||| |||   |||||| ||||||||||||||    
T  1029 tgacatttcacatgagaaggtataaagcttttccaccatgggaaagtttttttgaccattagatcaaa 1096  T

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Target: scaffold0725 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 5828 - 5876
Alignment:
Q  155 cattagatcaaagaggagcacatattttataatggtctgcccacactat 203  Q
    |||||||| ||||||||||||||||||||| |||||||| | |||||||    
T  5828 cattagattaaagaggagcacatattttattatggtctgtcaacactat 5876  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 23632972 - 23633027
Alignment:
Q  146 ttttttcaccattagatcaaagaggagcacatattttataatggtctgcccacact 201  Q
    |||||| |||||||||| ||||||||| | | ||||||| ||||||||||||||||    
T  23632972 tttttttaccattagattaaagaggagtatagattttatgatggtctgcccacact 23633027  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 17766632 - 17766699
Alignment:
Q  165 aagaggagcacatattttataatggtctgcccacactat-tcatccatcaacattctctctcctccat 231  Q
    ||||||| |||||||||||| || |||| ||||||| || |||||||| | |||||||||||||||||    
T  17766632 aagaggaacacatattttatgatagtctacccacaccatatcatccattatcattctctctcctccat 17766699  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 5433683 - 5433645
Alignment:
Q  155 cattagatcaaagaggagcacatattttataatggtctg 193  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  5433683 cattagattaaagaggagcacatattttatgatggtctg 5433645  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 5873222 - 5873272
Alignment:
Q  153 accattagatcaaagaggagcacatattttataatggtctgcccacactat 203  Q
    |||||||||| ||| |||| |||||||||||| |||||||| |||||||||    
T  5873222 accattagattaaaaaggaacacatattttatgatggtctgtccacactat 5873272  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 38150834 - 38150794
Alignment:
Q  155 cattagatcaaagaggagcacatattttataatggtctgcc 195  Q
    |||||||| ||||||||||||| ||||||| ||||||||||    
T  38150834 cattagattaaagaggagcacagattttatgatggtctgcc 38150794  T

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