View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_38 (Length: 238)
Name: NF3151_1D_low_38
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_38 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 45373130 - 45373347
Alignment:
| Q |
15 |
aacaaacagtgagaagattctattgattaatttaaatttaaattcgtataaattaggttataatctataattttgattgatccgatccttacagtgatta |
114 |
Q |
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| T |
45373130 |
aacaaacagtgagaagattctattgattaatttaaatttaaatccgtataaattaggttataatctctaattttgattgatccgatccttacagtgatta |
45373229 |
T |
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| Q |
115 |
ttttcgtagcggcagcgggagcaacaattggtataatcaagaattgcttctcttttgtagctggaactgttgccggtgtttacgttgctcaaaattataa |
214 |
Q |
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| T |
45373230 |
ttttcgtagcggcagcgggagcaacaattggtataatcaagaattgcttctcttttgtagctggaactgttgccggtgtttacgttgctcaaaattataa |
45373329 |
T |
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| Q |
215 |
actacctaacattgctga |
232 |
Q |
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| T |
45373330 |
actacctaacattgctga |
45373347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 45369973 - 45370059
Alignment:
| Q |
144 |
ggtataatcaagaattgcttctcttttgtagctggaactgttgccggtgtttacgttgctcaaaattataaactacctaacattgct |
230 |
Q |
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| T |
45369973 |
ggtataatcaagggttgcttctcttttatagcaggaactgttaccggtgtttacgtcgctcagaactataaagtacctgacattgct |
45370059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 45339664 - 45339700
Alignment:
| Q |
132 |
ggagcaacaattggtataatcaagaattgcttctctt |
168 |
Q |
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| T |
45339664 |
ggagcaacagttggtataatcaagagttgcttctctt |
45339700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 5885795 - 5885702
Alignment:
| Q |
139 |
caattggtataatcaagaattgcttctcttttgtagctggaactgttgccggtgtttacgttgctcaaaattataaactacctaacattgctga |
232 |
Q |
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| T |
5885795 |
caattggtgtaatcaataattgcttttcttttaaagcaggaactgttgccggagtttacgtcgcttagaattataaagtaccaaacattgctga |
5885702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 96258 - 96306
Alignment:
| Q |
184 |
ttgccggtgtttacgttgctcaaaattataaactacctaacattgctga |
232 |
Q |
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| T |
96258 |
ttgccggagtttacgttgctcaaaattataaactgcctaacattgctga |
96306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 9093295 - 9093343
Alignment:
| Q |
184 |
ttgccggtgtttacgttgctcaaaattataaactacctaacattgctga |
232 |
Q |
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| T |
9093295 |
ttgccggagtttacgtcgctcaaaattataaactgtctaacattgctga |
9093343 |
T |
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