View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_4 (Length: 480)
Name: NF3151_1D_low_4
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 38005132 - 38005401
Alignment:
| Q |
1 |
ataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctcatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38005132 |
ataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacatcaacatttttagaaagcctcaacaagctcctcatag |
38005231 |
T |
|
| Q |
101 |
gtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttatttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005232 |
gtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttatttgg |
38005331 |
T |
|
| Q |
201 |
acccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005332 |
acccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
38005401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 38005509 - 38005600
Alignment:
| Q |
369 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaa |
460 |
Q |
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| T |
38005509 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaa |
38005600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 26462675 - 26462407
Alignment:
| Q |
1 |
ataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctcatag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
26462675 |
ataaagtactaaagagtgataacatcagtcttgggtggttcagttggatcaaaatcatcaacaacaacatttttagaaagtctcaacaagctcctcatag |
26462576 |
T |
|
| Q |
101 |
gtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttatttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
26462575 |
gtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgctttctcaaacaacattgtatccttgttatttgg |
26462476 |
T |
|
| Q |
201 |
acccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctacc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26462475 |
tcccaacaaacaatgtcccaatattctcaaaactggttgtaacaattcccatggcattggaaccctacc |
26462407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 26462304 - 26462213
Alignment:
| Q |
369 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaa |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| || |||||| |||||| |
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| T |
26462304 |
atacatgtcaccatcttcaccagcccaaatcttacaaaagttacaaaaatcaatttttggtgaaacaggcatttcagatattttgctgtaaa |
26462213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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