View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_40 (Length: 234)
Name: NF3151_1D_low_40
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_40 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 24494766 - 24494539
Alignment:
| Q |
7 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494766 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
24494667 |
T |
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| Q |
107 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494666 |
gtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
24494567 |
T |
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| Q |
207 |
agtgtaggctatgtcaggccttgtcatg |
234 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24494566 |
agtgtaggctatgtcaggccttgtcatg |
24494539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 94116 - 93889
Alignment:
| Q |
7 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
94116 |
gtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcacttcaagtgaa |
94017 |
T |
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| Q |
107 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
94016 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaaacttatttac |
93917 |
T |
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| Q |
207 |
agtgtaggctatgtcaggccttgtcatg |
234 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
93916 |
agtgtaggctatgtcaggccttgtcatg |
93889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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