View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_41 (Length: 233)
Name: NF3151_1D_low_41
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16842756 - 16842533
Alignment:
| Q |
1 |
tcatctggttatatattccaacagcaccctcgagcaaacctgcctctttacaagaacaaatcatctaccaacttattcttcacataagccataaccacag |
100 |
Q |
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| T |
16842756 |
tcatctggttatatattccaacagcatcctcgagcaaacctgcctctttacaagaacaaatcatctaccaacttattcttcacataagccataaccacag |
16842657 |
T |
|
| Q |
101 |
tggaacaacaactccgattaaccaaaatatacagataaaacaaacctttaagaaaacacggcaactcataaactttcccagccctctcaaacactcacaa |
200 |
Q |
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| T |
16842656 |
tggaacaacaactccgattaaccaaaatatacagataaaacaaacctttaagaaaacacggcaactcataaactttcccagccctctcaaacactcacaa |
16842557 |
T |
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| Q |
201 |
gagtaccaattatcgaagaataat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
16842556 |
gagtaccaattatcgaagaataat |
16842533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 24209538 - 24209372
Alignment:
| Q |
60 |
atcatctaccaacttattcttcacataagccataaccacagtggaacaacaactccgattaaccaaaatatacagataaaacaaacctttaagaaaacac |
159 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||| |||| | |
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| T |
24209538 |
atcatccaccaacttattcttcacataagccataaccacagtggaacaacagctctgattaaccaaaatataccgataaaacgaacctttaagcaaacgc |
24209439 |
T |
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| Q |
160 |
ggcaactcataaactttcccagccctctc--aaacactcacaagagtaccaattatcgaagaataat |
224 |
Q |
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| T |
24209438 |
ggcaactcataaactttcccagccctctcataaacactcacaagagtaccaattatcgaagaataat |
24209372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24209668 - 24209606
Alignment:
| Q |
1 |
tcatctggttatatattccaacagcaccctcgagcaaacctgcctctttacaagaacaaatca |
63 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
24209668 |
tcatctggttatatattccaacagcatcctcaagcaaacctgcctctttacaagaacaaatca |
24209606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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