View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_43 (Length: 221)
Name: NF3151_1D_low_43
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 42474768 - 42474940
Alignment:
| Q |
30 |
tttacttgtgattttatgtatacatgttcaattttttcctagattttcttagtcttttcttagctacgtgcaaattattccatgatgcatgcaatcttat |
129 |
Q |
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| T |
42474768 |
tttacttgtgattttatatatacatgttcaattttttcctagattttcttagtcttttcttagctacgtgcaaattattccatgatgcatgcaatcttat |
42474867 |
T |
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| Q |
130 |
tcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgctttagtatgtactgactactgagt |
202 |
Q |
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| T |
42474868 |
tcttgttgagtcatatgcaactcttggtttttccaatggttacatgtgctttagtatgtactggctactgagt |
42474940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 42468103 - 42468254
Alignment:
| Q |
34 |
cttgtgattttatgtatacatgttcaattttttcctagattttcttagtcttttcttagctacgtgcaaattattccatgatgcatgcaatcttattctt |
133 |
Q |
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| T |
42468103 |
cttgtgattttatttataaatgttcaattttttcatagattttcttagtcttttcttagctgcgtgcaaattattccatgatgcatgcaatcttattctt |
42468202 |
T |
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| Q |
134 |
gttgagtcatatgcaactctt--ggtttttccaatggttacatgtgctttagta |
185 |
Q |
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| T |
42468203 |
gttgagtc--atgcaaatcttaaggtttttccaatggttacatgtgctttagta |
42468254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 42480251 - 42480414
Alignment:
| Q |
30 |
tttacttgtgattttatgtatacatgttca-----attttttcctagattttcttagtctt-ttcttagctacgtgcaaattattccatgatgcatgcaa |
123 |
Q |
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| T |
42480251 |
tttacttgttatttgatttatacatgttcaaatttaatttttcctaaattttcctagtcttattgttagctacaaacaaactatcccatgatgcatgcaa |
42480350 |
T |
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| Q |
124 |
tcttattcttgttgagtcatatgcaactctt--ggtttttccaatggttacatgtgctttagta |
185 |
Q |
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| T |
42480351 |
tcttattcttgttgagttatatgcaaatcttaaggtttctccaatggttacatgtgcattagta |
42480414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32710154 - 32710191
Alignment:
| Q |
1 |
tgtaattttattataaatttgatcttgtatttacttgt |
38 |
Q |
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| T |
32710154 |
tgtaattttattataaatttgatcttgtatttatttgt |
32710191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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