View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_1D_low_54 (Length: 210)

Name: NF3151_1D_low_54
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_1D_low_54
NF3151_1D_low_54
[»] chr1 (12 HSPs)
chr1 (3-95)||(13500002-13500094)
chr1 (143-204)||(13411577-13411637)
chr1 (156-204)||(13500143-13500191)
chr1 (144-204)||(20355298-20355357)
chr1 (144-204)||(20555549-20555608)
chr1 (58-91)||(13411481-13411514)
chr1 (171-204)||(13572497-13572530)
chr1 (148-204)||(20358691-20358751)
chr1 (148-204)||(20552219-20552279)
chr1 (148-204)||(20561198-20561258)
chr1 (60-92)||(13417137-13417169)
chr1 (60-92)||(13679952-13679984)
[»] scaffold0592 (2 HSPs)
scaffold0592 (137-204)||(1755-1822)
scaffold0592 (137-204)||(7959-8026)
[»] scaffold0291 (2 HSPs)
scaffold0291 (141-204)||(20398-20461)
scaffold0291 (58-91)||(20527-20560)
[»] scaffold0006 (4 HSPs)
scaffold0006 (171-204)||(160013-160046)
scaffold0006 (58-91)||(283700-283733)
scaffold0006 (137-204)||(39757-39824)
scaffold0006 (158-204)||(283804-283850)
[»] scaffold0886 (1 HSPs)
scaffold0886 (141-204)||(451-514)
[»] chr2 (1 HSPs)
chr2 (58-95)||(38062543-38062580)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 13500002 - 13500094
Alignment:
Q  3 tgagatgaaacaaataatacctttgctccctgtctttcaggattaatctcttatatttctttcagttttttgctattttcccattcctattgc 95  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13500002 tgagctgaaacaaaaaatacctttgctccctgtctttcaggattaatctcttatatttctttcagttttttgctattttcccattcctattgc 13500094  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 13411577 - 13411637
Alignment:
Q  143 atatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    |||||||||||||||||| |||||||  ||||||||||||||| ||||||||||||||||||    
T  13411577 atatattctctgcatttt-aatttgttatcactctgttcatttcaaagattggagtttcttc 13411637  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 13500143 - 13500191
Alignment:
Q  156 atttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  13500143 atttttaatttgtactcactctgttcatttcaaagattggagtttcttc 13500191  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 20355298 - 20355357
Alignment:
Q  144 tatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    ||||||||||||||||| |||||||  ||||||||||||||| ||| ||||||||||||||    
T  20355298 tatattctctgcatttt-aatttgttatcactctgttcatttcaaatattggagtttcttc 20355357  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 20555608 - 20555549
Alignment:
Q  144 tatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    ||||||||||||||||| |||||||  ||||||||||||||| ||| ||||||||||||||    
T  20555608 tatattctctgcatttt-aatttgttatcactctgttcatttcaaatattggagtttcttc 20555549  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 13411481 - 13411514
Alignment:
Q  58 tttctttcagttttttgctattttcccattccta 91  Q
    ||||||||||||||||||||||||||||||||||    
T  13411481 tttctttcagttttttgctattttcccattccta 13411514  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 13572497 - 13572530
Alignment:
Q  171 tcactctgttcatttaaaagattggagtttcttc 204  Q
    ||||||||||||||||||||||||||||||||||    
T  13572497 tcactctgttcatttaaaagattggagtttcttc 13572530  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 20358691 - 20358751
Alignment:
Q  148 ttctctgcatttttaatttgtagtcactc----tgttcatttaaaagattggagtttcttc 204  Q
    |||||||||||||||||||||| ||||||    ||||||||| || |||||||||||||||    
T  20358691 ttctctgcatttttaatttgtactcactcactttgttcatttcaaggattggagtttcttc 20358751  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 20552279 - 20552219
Alignment:
Q  148 ttctctgcatttttaatttgtagtcactc----tgttcatttaaaagattggagtttcttc 204  Q
    |||||||||||||||||||||| ||||||    ||||||||| || |||||||||||||||    
T  20552279 ttctctgcatttttaatttgtactcactcactttgttcatttcaaggattggagtttcttc 20552219  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 20561258 - 20561198
Alignment:
Q  148 ttctctgcatttttaatttgtagtcactc----tgttcatttaaaagattggagtttcttc 204  Q
    |||||||||||||||||||||| ||||||    ||||||||| || |||||||||||||||    
T  20561258 ttctctgcatttttaatttgtactcactcactttgttcatttcaaggattggagtttcttc 20561198  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 13417137 - 13417169
Alignment:
Q  60 tctttcagttttttgctattttcccattcctat 92  Q
    ||||||| |||||||||||||||||||||||||    
T  13417137 tctttcacttttttgctattttcccattcctat 13417169  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 13679952 - 13679984
Alignment:
Q  60 tctttcagttttttgctattttcccattcctat 92  Q
    ||||||| |||||||||||||||||||||||||    
T  13679952 tctttcacttttttgctattttcccattcctat 13679984  T

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Target: scaffold0592 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 1755 - 1822
Alignment:
Q  137 tctcatatatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    ||||||||||||| |||||| | |||||||||  |||| |||||||||| ||| ||||||||||||||    
T  1755 tctcatatatattatctgcactattaatttgttatcacactgttcatttcaaatattggagtttcttc 1822  T

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Target: scaffold0592; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 7959 - 8026
Alignment:
Q  137 tctcatatatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    ||||||||||||| |||||| | |||||||||  |||| |||||||||| ||| ||||||||||||||    
T  7959 tctcatatatattatctgcactattaatttgttatcacactgttcatttcaaatattggagtttcttc 8026  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 20461 - 20398
Alignment:
Q  141 atatatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    ||||||||||||||||||||||||||    ||| ||||||||||| ||||||| ||||||||||    
T  20461 atatatattctctgcatttttaatttcctatcagtctgttcatttcaaagattagagtttcttc 20398  T

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Target: scaffold0291; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 20560 - 20527
Alignment:
Q  58 tttctttcagttttttgctattttcccattccta 91  Q
    ||||||||||||||||||||||||| ||||||||    
T  20560 tttctttcagttttttgctattttctcattccta 20527  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 160013 - 160046
Alignment:
Q  171 tcactctgttcatttaaaagattggagtttcttc 204  Q
    ||||||||||||||||||||||||||||||||||    
T  160013 tcactctgttcatttaaaagattggagtttcttc 160046  T

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Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 283700 - 283733
Alignment:
Q  58 tttctttcagttttttgctattttcccattccta 91  Q
    ||||||||||||||||||||||||||||||||||    
T  283700 tttctttcagttttttgctattttcccattccta 283733  T

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Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 39757 - 39824
Alignment:
Q  137 tctcatatatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    |||||||||||||| |||||||||||||||    ||| ||||||||||| |||||| | |||||||||    
T  39757 tctcatatatattcgctgcatttttaatttcctatcagtctgttcatttcaaagatcgaagtttcttc 39824  T

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Target: scaffold0006; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 283804 - 283850
Alignment:
Q  158 ttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    |||||||||||  ||||||||||||||| ||| ||||||||||||||    
T  283804 ttttaatttgttatcactctgttcatttcaaatattggagtttcttc 283850  T

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Target: scaffold0886 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 514 - 451
Alignment:
Q  141 atatatattctctgcatttttaatttgtagtcactctgttcatttaaaagattggagtttcttc 204  Q
    |||||||||| |||||||||||||||    ||| ||||||||||| |||||| |||||||||||    
T  514 atatatattcgctgcatttttaatttcctatcagtctgttcatttcaaagatcggagtttcttc 451  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 38062580 - 38062543
Alignment:
Q  58 tttctttcagttttttgctattttcccattcctattgc 95  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  38062580 tttctttcacttttttgctactttcccattcctattgc 38062543  T

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