View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_58 (Length: 204)
Name: NF3151_1D_low_58
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 1630121 - 1629944
Alignment:
| Q |
20 |
ctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttctta----ca |
115 |
Q |
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| T |
1630121 |
ctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatgca |
1630022 |
T |
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| Q |
116 |
tacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
193 |
Q |
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| T |
1630021 |
tacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
1629944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
33 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
132 |
Q |
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| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
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| Q |
133 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
193 |
Q |
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| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
150 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
193 |
Q |
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| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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