View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_1D_low_6 (Length: 471)
Name: NF3151_1D_low_6
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 12540650 - 12541093
Alignment:
| Q |
1 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtaccaaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540650 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtaccaaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
12540749 |
T |
|
| Q |
101 |
tcttacccttcacaaggttgtacttatgtcaatgataataatttttttgtaactcgatctactttcaactaatttaannnnnnnnnccttctttttatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12540750 |
tcttacccttcacaaggttgtacttatgtcaatgataataatttttttgtaactcgatctactttcaactaatttaattttttt----ttctttttatgt |
12540845 |
T |
|
| Q |
201 |
ggattttgacagctttatggacatggtattgatgaggatgattggaaggaaccagaaattattccaaactgcttttcctctcaactaagaacatgctcgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12540846 |
ggattttgacagctttatggacatggtattgatgaggatgattggaaggaaccagaaattattccaaactgcctttcctctcaactaagaacatgctcgc |
12540945 |
T |
|
| Q |
301 |
ttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccagg |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540946 |
ttatatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccagg |
12541045 |
T |
|
| Q |
401 |
ggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12541046 |
ggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
12541093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 12486492 - 12486933
Alignment:
| Q |
1 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtaccaaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12486492 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtaccaaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
12486591 |
T |
|
| Q |
101 |
tcttacccttcacaaggttgtacttatgtcaatgataataatttttttgtaactcgatctactttcaactaatttaannnnnnnnnccttctttttatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
12486592 |
tcttacccttcacaaggttgtacttatgtcaatgataataatttttttgtagctc----tactttcaactaatttaatttttttt--cttctttctatgt |
12486685 |
T |
|
| Q |
201 |
ggattttgacagctttatggacatggtattgatgaggatgattggaaggaaccagaaattattccaaactgcttttcctctcaactaagaacatgctcgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12486686 |
ggattttgacagctttatggacatggtattgatgaggatgattggaaggaaccagaaattattccaaactgcctttcctctcaactaagaacatgctcgc |
12486785 |
T |
|
| Q |
301 |
ttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccagg |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12486786 |
ttatatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccagg |
12486885 |
T |
|
| Q |
401 |
ggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12486886 |
ggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
12486933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 12507924 - 12508365
Alignment:
| Q |
1 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtaccaaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507924 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtacctaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
12508023 |
T |
|
| Q |
101 |
tcttacccttcacaaggttgtacttatgtcaatgataataatttttttgtaactcgatctactttcaactaatttaannnnnnnnnccttctttttatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
12508024 |
tcttacccttcacaaggttgtacttatgtcaatgataataatttttttgtagctc----tactttcaactaatttaatttttttt--cttctttctatgt |
12508117 |
T |
|
| Q |
201 |
ggattttgacagctttatggacatggtattgatgaggatgattggaaggaaccagaaattattccaaactgcttttcctctcaactaagaacatgctcgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12508118 |
ggattttgacagctttatggacatggtattgatgaggatgattggaaggaaccagaaattattccaaactgcctttcctctcaactaagaacatgctcgc |
12508217 |
T |
|
| Q |
301 |
ttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccagg |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12508218 |
ttatatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgtgcacgatgacaattagtgcctctccagg |
12508317 |
T |
|
| Q |
401 |
ggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12508318 |
ggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
12508365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 361
Target Start/End: Original strand, 12659034 - 12659162
Alignment:
| Q |
233 |
tgaggatgattggaaggaaccagaaattattccaaactgcttttcctctcaactaagaacatgctcgcttatagattacaaaggcatgaagtgtgagctt |
332 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||| || ||| ||||||||||||| ||||||||||| |||| || | | | ||||| || || ||||||| |
|
|
| T |
12659034 |
tgaggacgattggaaggaaccagcaattgttccgaaatgcatttcctctcaacttagaacatgctcacttaaagctcatagaggcaggacgtatgagctt |
12659133 |
T |
|
| Q |
333 |
cagtttgcagagtatgttttgaagaatgc |
361 |
Q |
| |
|
||||||||||||||| || |||||||||| |
|
|
| T |
12659134 |
cagtttgcagagtatattatgaagaatgc |
12659162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 12658812 - 12658917
Alignment:
| Q |
1 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtaccaaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||| |||| ||||||||||||||||| |||||||| |||| | |||||||||| |||||||| |
|
|
| T |
12658812 |
ttcataacttaacttgcatggagcttatttttgggtcaagttggtgtaccaaatggaagtgggtgctagaattgcttgaacattgccctaagcttcaaaa |
12658911 |
T |
|
| Q |
101 |
tcttac |
106 |
Q |
| |
|
|||||| |
|
|
| T |
12658912 |
tcttac |
12658917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 448
Target Start/End: Original strand, 11378395 - 11378570
Alignment:
| Q |
273 |
ttttcctctcaactaagaacatgctcgcttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgc |
372 |
Q |
| |
|
||||| ||||| || | |||||| || ||||||| ||| ||||||||||| ||||| ||||||||||| | ||| ||||||||||||| || || ||| |
|
|
| T |
11378395 |
ttttcatctcagcttaaaacatgttcccttataggttataaaggcatgaattgtgactttcagtttgcaaaatatattttgaagaatgcaaaagtattgc |
11378494 |
T |
|
| Q |
373 |
gcacgatgacaattagtgcctctccaggggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
448 |
Q |
| |
|
|| |||||||| | ||||||||| | |||| ||| ||||||||||||| ||||| | ||| |||||||||| |
|
|
| T |
11378495 |
agacaatgacaatcaatgcctctcctgtggatataaacataaagcaccaaattctaatcaagttaactttgtgtcc |
11378570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 12646998 - 12647103
Alignment:
| Q |
1 |
ttcataacttaactcacatggagcttatattcacatcaaattggcgtaccaaatggaagtggttgctagaaatgctgaagaattgccctaaacttcaaaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||| |||| | |||||||||| || |||||||||||| || ||||| |||| | |||| ||||| |||||||| |
|
|
| T |
12646998 |
ttcataacttaacccacatggagcttgtatttgcgtcaaattggcagacgaaatggaagtggctggtagaagtgctcgaacattgtcctaagcttcaaaa |
12647097 |
T |
|
| Q |
101 |
tcttac |
106 |
Q |
| |
|
|||||| |
|
|
| T |
12647098 |
tcttac |
12647103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 12623313 - 12623246
Alignment:
| Q |
290 |
aacatgctcgcttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaaga |
357 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
12623313 |
aacatgctcgcttatagcttttaaaggcatgaagtgtgagctaaagtttgtagagtacattttgaaga |
12623246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 427
Target Start/End: Original strand, 12652648 - 12652787
Alignment:
| Q |
288 |
agaacatgctcgcttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaatta |
387 |
Q |
| |
|
|||||||| || ||||||| ||| ||||| ||||||| ||| |||||||||||||||| ||||||||||||| || |||| | ||| |||||||| | |
|
|
| T |
12652648 |
agaacatgttcacttataggttataaaggtatgaagtccgagtttcagtttgcagagtacattttgaagaatgcaaaagtactccacaccatgacaatca |
12652747 |
T |
|
| Q |
388 |
gtgcctctccaggggatttaactttaaagcaccaaatgct |
427 |
Q |
| |
|
||| || |||| ||| | | | |||||||||||||||| |
|
|
| T |
12652748 |
ctgcttcaccagttgatatcaatataaagcaccaaatgct |
12652787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 441
Target Start/End: Original strand, 12647189 - 12647428
Alignment:
| Q |
196 |
tatgtggattttgacagctttatggacatggtattgatgaggatgattggaaggaaccagaaattattccaaactgcttttcctctcaactaagaacatg |
295 |
Q |
| |
|
|||||||||||| | ||||||||||| |||| | || ||||| |||||||| ||||| ||||| ||||| | ||| ||| ||||||||| |||||||| |
|
|
| T |
12647189 |
tatgtggattttaatagctttatggatatggaactggcgaggacaattggaagaaaccaaaaattgttccagaatgcatttactctcaacttagaacatg |
12647288 |
T |
|
| Q |
296 |
ctcgcttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctct |
395 |
Q |
| |
|
|| |||| | ||| ||||||| ||||||||| || ||| ||||| || | |||||||| || || ||||||| |||||||| | |||||| |
|
|
| T |
12647289 |
ttcacttacatcttataaaggca------atgagcttcaattcgcaaagtatattattaagaatgcaaaagtaatgcgcaccatgacaataattgcctcg |
12647382 |
T |
|
| Q |
396 |
ccaggggatttaactttaaagcaccaaatgctaatggatttatctt |
441 |
Q |
| |
|
|| | |||| | | | |||||||||||||| ||||| | ||||||| |
|
|
| T |
12647383 |
ccggtggatatgaatataaagcaccaaatgataatgaaattatctt |
12647428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 312 - 448
Target Start/End: Complemental strand, 14987510 - 14987374
Alignment:
| Q |
312 |
aaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccaggggatttaactt |
411 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||| |||||||||| |||||| | | ||||||||| |
|
|
| T |
14987510 |
aaaggtatgaagtgtgagcttcattttgcagaatatgttttgaacaatgcaaacttaccgcgcacaatgacaattaacgcctcttctgaagatttaacta |
14987411 |
T |
|
| Q |
412 |
taaagcaccaaatgctaatggatttatctttgtgtcc |
448 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14987410 |
taaagtaccaaatgctaatggatttatctttgtgtcc |
14987374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 448
Target Start/End: Complemental strand, 15329508 - 15329348
Alignment:
| Q |
288 |
agaacatgctcgcttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaatta |
387 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||||| |||||||||||||||| ||||||| | |||||||| || || || ||| ||| |||| ||||| |
|
|
| T |
15329508 |
agaacatgctcgattataggttataaaggcatgaaatgtgagcttcagtttgtagagtatatattgaagaacgcaaaagtattgcacaccatgaaaatta |
15329409 |
T |
|
| Q |
388 |
gtgcctctccaggggatttaactttaaagcaccaaatgctaatggatttatctttgtgtcc |
448 |
Q |
| |
|
|||||||| | |||| ||| | | ||| |||||||||||||| | |||||| ||||||| |
|
|
| T |
15329408 |
atgcctctctcgtggatataaatatgaagtaccaaatgctaatgaaattatctctgtgtcc |
15329348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 3939701 - 3939788
Alignment:
| Q |
274 |
tttcctctcaactaagaacatgctcgcttatagattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgc |
361 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||| ||| ||||||| || |||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
3939701 |
tttcttctcaattaaggacatgctcgcttataggttataaaggcagcaactgtgagcttctgtttgctgagtatattttgaagaatgc |
3939788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University