View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_high_16 (Length: 403)
Name: NF3151_2D_high_16
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_high_16 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 28608520 - 28608922
Alignment:
| Q |
1 |
ccttgttgaactcgttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagata |
100 |
Q |
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| T |
28608520 |
ccttgttgaactcgttggacgtgatggtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagata |
28608619 |
T |
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| Q |
101 |
gagttagaaagtattgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattc |
200 |
Q |
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| T |
28608620 |
gagttagaaagtattgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattc |
28608719 |
T |
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| Q |
201 |
aggaagacatatacaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactga |
300 |
Q |
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| T |
28608720 |
acgaagacatatacaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactga |
28608819 |
T |
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| Q |
301 |
tgttgcgttcaaagatatcaacttgaatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaat |
400 |
Q |
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| T |
28608820 |
tgttgcgttcaaagatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaat |
28608919 |
T |
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| Q |
401 |
ttt |
403 |
Q |
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| T |
28608920 |
ttt |
28608922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 438384 - 437993
Alignment:
| Q |
1 |
ccttgttgaactcgttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagata |
100 |
Q |
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|||||||||| |||||||||||| |||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||||||| || |
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| T |
438384 |
ccttgttgaaatcgttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagcta |
438285 |
T |
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| Q |
101 |
gagttagaaagtattgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattc |
200 |
Q |
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| T |
438284 |
gagttagaaagcattaccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattc |
438185 |
T |
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| Q |
201 |
aggaagacatatacaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactga |
300 |
Q |
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| T |
438184 |
acgaagatatatacaactcggctaatgaaaaatgtacaagtttgattctccttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaa |
438085 |
T |
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| Q |
301 |
tgttgcgttcaaagatatcaacttgaatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaa |
392 |
Q |
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| ||| | ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| || ||| |||||||||| ||||||| |
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| T |
438084 |
tactgcatacaaagatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgtggaccgtgatcttgggtcattaccaa |
437993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 399
Target Start/End: Original strand, 13652416 - 13652789
Alignment:
| Q |
26 |
ggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtattgataataaat |
125 |
Q |
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|||||| |||||||| |||||||||| |||||||||| ||| || || ||||||||||||| || |||||| ||||| |||||| ||| |||||| || |
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| T |
13652416 |
ggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacat |
13652515 |
T |
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| Q |
126 |
ttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcaggaagacatatacaatttagttaa |
225 |
Q |
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| T |
13652516 |
ttgaagcatttggagaggcgtacgatgctgttagagtccgaaccttaaatgttgtgtcatcctatgcaaccattcacgaggacatatataattcagctaa |
13652615 |
T |
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| Q |
226 |
cgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaagatatcaacttg |
325 |
Q |
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| T |
13652616 |
tgaaaaacacacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaacctg |
13652715 |
T |
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| Q |
326 |
aatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaa |
399 |
Q |
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| T |
13652716 |
aatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaa |
13652789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 25 - 399
Target Start/End: Original strand, 13659915 - 13660289
Alignment:
| Q |
25 |
tggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtattgataataaa |
124 |
Q |
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||||||| ||||||| |||||||||| ||||||||| |||| || || | ||||||||||| |||||||| ||||| |||||| ||| |||||| | |
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| T |
13659915 |
tggtgcacttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagcattaataataca |
13660014 |
T |
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| Q |
125 |
tttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcaggaagacatatacaatttagtta |
224 |
Q |
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||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||||||| || |||||||| || | | || |
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| T |
13660015 |
tttgaagcacttggagaggcatatgatgctgtcagagtcgaaaccttaaatgttgtgtcatcctattcaaccattcatgaggacatatataactctgcta |
13660114 |
T |
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| Q |
225 |
acgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaagatatcaactt |
324 |
Q |
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| T |
13660115 |
atgaaaaacgcacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaacca |
13660214 |
T |
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| Q |
325 |
gaatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaa |
399 |
Q |
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|||||||||||||| | |||||||||| |||||| | ||||||||||||||||||||||| || |||||||||| |
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| T |
13660215 |
gaatgtgatgcaaacttcaccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaa |
13660289 |
T |
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