View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_high_27 (Length: 277)
Name: NF3151_2D_high_27
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 1218308 - 1218419
Alignment:
| Q |
148 |
caaatttcacattggatctcttaatatttaatccaaagttctttcctttttattgttattagaatctaagaattgttttttccctttatagaaaacaccc |
247 |
Q |
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| T |
1218308 |
caaatttcacattggatctcttaatatttaatcaaaagttctttcctttttactgttattagaatctaagaattgttttttcccttcatagaaaacacca |
1218407 |
T |
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| Q |
248 |
atcattggtttc |
259 |
Q |
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|||||||||||| |
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| T |
1218408 |
atcattggtttc |
1218419 |
T |
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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 1218180 - 1218274
Alignment:
| Q |
20 |
gttcaaagtgcaaatgttgcaaaggaaccaccaatttggttcaaagggttgcatcctcccagaatcaagtgagtttagctaagaaaaaaatgtga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1218180 |
gttcaaagtgcaaatgttgcaaaggaaccaccaatttggttcaaagggttgcatcctcccagaatcaagtgagtttagctaagaaaaaaatgtga |
1218274 |
T |
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