View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_high_30 (Length: 268)
Name: NF3151_2D_high_30
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 42530640 - 42530397
Alignment:
| Q |
22 |
gatgaaaaaagtactcatacaaataagatgtctcatatggcccaaaatacttaggaagtgcactataaaccaactatctacacaaagatcaaacctctaa |
121 |
Q |
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| T |
42530640 |
gatgaaaaaagtactcctacaaataagatgtctcatatggcccaaaatacttaggaagtgcactataaaccaactatctaca--aagatcaaacctctaa |
42530543 |
T |
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| Q |
122 |
gaactaagagtgaaagaaaagcatgcataaaagttttccctaaacaagttcactatataactggttaaacaactaaaggatggtaggaaacaatcacatg |
221 |
Q |
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| T |
42530542 |
gaactaagagtgaaagaaaagcatgcataaaagttttccctaaacaagttcattatataactggttaaacaactaaaggatggtaggaaacaatcacatg |
42530443 |
T |
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| Q |
222 |
acaaataatgcttacaatgaagcctgagaagaaacaataaaaccta |
267 |
Q |
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| T |
42530442 |
acaaataatgcttacaatgaagcctgagaagaaacaataaaaccta |
42530397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 42536239 - 42536099
Alignment:
| Q |
127 |
aagagtgaaagaaaagcatgcataaaagttttccctaaacaagttcactatataactggttaaacaactaaaggatggtaggaaacaatcacatgacaaa |
226 |
Q |
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| T |
42536239 |
aagagtgaaagaaaagcatgcataaaaaatttccctaaacaagttcactctataactggttaaacaactaaaggatggtaggcaacaatcacaagacaaa |
42536140 |
T |
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| Q |
227 |
taatgcttacaatgaagcctgagaagaaacaataaaaccta |
267 |
Q |
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| T |
42536139 |
taatgcttacaatgaagcctgagaagaaacaataaaaccta |
42536099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 27826576 - 27826514
Alignment:
| Q |
130 |
agtgaaagaaaagcatgcataaaagttttccctaaacaagttcactatataactggttaaacaa |
193 |
Q |
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| T |
27826576 |
agtgaaagaaacacatgcataacagttttacctgaacaa-ttcactatataactggctaaacaa |
27826514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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