View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_high_36 (Length: 246)
Name: NF3151_2D_high_36
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 6191370 - 6191227
Alignment:
| Q |
19 |
gatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagta |
118 |
Q |
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| T |
6191370 |
gatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga---caggttattgttcccgacaccactgatccaataagta |
6191274 |
T |
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| Q |
119 |
aagaaaattcaccaatggatctaagaaactttgaagatgaatcagat |
165 |
Q |
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| T |
6191273 |
aagaaaattcaccaatggatctaagaaactttgaagatgaatcagat |
6191227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 6191447 - 6191516
Alignment:
| Q |
160 |
tcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcattagtcaaggg |
229 |
Q |
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| T |
6191447 |
tcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcattagtcaaggg |
6191516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 6184454 - 6184514
Alignment:
| Q |
160 |
tcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcatt |
220 |
Q |
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| T |
6184454 |
tcagattcaattggtcttccttcatttccagtgcttttgaactgcacaatgaaaaagcatt |
6184514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 6184372 - 6184290
Alignment:
| Q |
27 |
agacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatc |
109 |
Q |
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| T |
6184372 |
agacaattgtgatgagaccaagaatccagaagaaaaaccaaacatacaaggagaacaaatcattgttcctgaaaccaatgatc |
6184290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 37454249 - 37454338
Alignment:
| Q |
36 |
tgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaataagtaaagaaaa |
125 |
Q |
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| T |
37454249 |
tgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttattgttcctgacaccaatggttcaataagcaaagaaaa |
37454338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 37454152 - 37454084
Alignment:
| Q |
160 |
tcagattcagttggtcttccttcatttcctttgctttcgaactgcacaatgaaaaagcattagtcaagg |
228 |
Q |
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| T |
37454152 |
tcagattctgttggtcttccttcaattcctttgctttctaactacacaatgaaaaagaattggtcaagg |
37454084 |
T |
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