View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_high_38 (Length: 234)
Name: NF3151_2D_high_38
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_high_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 48106045 - 48106252
Alignment:
| Q |
19 |
ctaacaactttatctccactatattcaatagtattatactcattcataaacaatgttgtttctggatcaagctcatgagcttttaaatagtataattcag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48106045 |
ctaacaactttatctccactatattcaatagtattatactcattcataaacaattttgtttctggatcaagctcatgagcttttaaatagtataattcag |
48106144 |
T |
|
| Q |
119 |
atgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacaga |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48106145 |
atgcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacaga |
48106244 |
T |
|
| Q |
219 |
ttcgattc |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
48106245 |
ttcgattc |
48106252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 48062419 - 48062598
Alignment:
| Q |
28 |
ttatctccactatattcaatagtattatactcattcataaacaatgttgtttctgg-atcaagctcatgagcttttaaatagtataattcagatgcattt |
126 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||||||||| |||| |||| || ||| |||||| | | |||| | ||||||||| | |||| |||||| |
|
|
| T |
48062419 |
ttatcaccactgtattcgatagtgttatactcattcatgaaca-tgttcgttgtgggatcaagatggtaagctgctgaatagtatactgcagaggcattt |
48062517 |
T |
|
| Q |
127 |
ttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttatacctt |
207 |
Q |
| |
|
|| || || ||||||||| ||||||| || |||||||| ||||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
48062518 |
ttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttatacctt |
48062598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 48099455 - 48099632
Alignment:
| Q |
30 |
atctccactatattcaatagtattatactcattcataaacaatgttgtttctggatcaagctcatgagcttttaaatagtataattcagatgcattttta |
129 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||| |||| | | ||||||||||||| | | |||| || |||| |||| | || ||||||| |
|
|
| T |
48099455 |
atctccacttgattcaatggtgttaaactcattcatgaacattttgatttctggatcaagatggtaagctgttgaataatatattggcgaggcattttcg |
48099554 |
T |
|
| Q |
130 |
cctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttatacctt |
207 |
Q |
| |
|
|| ||||||| |||| ||||||| | |||||||| |||||||| || ||||||||||||| || |||| |||||||| |
|
|
| T |
48099555 |
ccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctatacctt |
48099632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University