View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_high_4 (Length: 772)
Name: NF3151_2D_high_4
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 291 - 564
Target Start/End: Original strand, 38005128 - 38005401
Alignment:
| Q |
291 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38005128 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacatcaacatttttagaaagcctcaacaagctcctc |
38005227 |
T |
|
| Q |
391 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005228 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
38005327 |
T |
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| Q |
491 |
ttggacccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005328 |
ttggacccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctaccg |
38005401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 38004850 - 38005056
Alignment:
| Q |
9 |
ctgatatgaacaaaagtaaatttaacatccataattattctcaattacaatatctgctgaannnnnnngttggaaccaaaagtgaaatttcaccacaatg |
108 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38004850 |
ctgataagaacaaaagtaaatttaacatccataactattctcaattacaatatctgctgaatttttttgttggaaccaaaagtgaaatttcaccacaatg |
38004949 |
T |
|
| Q |
109 |
aaactttgaaaaccaattatattgactcccactaaaataaaattcaattgtcaattaacttgaattagaatcatcgatccccacaaatactcaatccatc |
208 |
Q |
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| T |
38004950 |
aaactttgaaaaccaattatattgactcccactaaaataaaattcaattgtcaattaacttgaattagaatcatcgatccccaaaaatactcaatccatc |
38005049 |
T |
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| Q |
209 |
atgcctc |
215 |
Q |
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||||||| |
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| T |
38005050 |
atgcctc |
38005056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 663 - 754
Target Start/End: Original strand, 38005509 - 38005600
Alignment:
| Q |
663 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaa |
754 |
Q |
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| T |
38005509 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaa |
38005600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 291 - 563
Target Start/End: Complemental strand, 26462679 - 26462407
Alignment:
| Q |
291 |
caccataaagtactaaagagtgataacatcagtcttaggtggttcagttggatcaaaatcatcaacattaacatttttagaaagcctcaacaagctcctc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
26462679 |
caccataaagtactaaagagtgataacatcagtcttgggtggttcagttggatcaaaatcatcaacaacaacatttttagaaagtctcaacaagctcctc |
26462580 |
T |
|
| Q |
391 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgcattctcaaacaacattgtatccctgttat |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
26462579 |
ataggtaaaatagctttagggttaacatcatgcattgccctagcaaacaaacacctacatgcttcacttgctttctcaaacaacattgtatccttgttat |
26462480 |
T |
|
| Q |
491 |
ttggacccaacaaacaatgtcccaatattctcaaaactggttgcaacaattcccatggcattggaaccctacc |
563 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26462479 |
ttggtcccaacaaacaatgtcccaatattctcaaaactggttgtaacaattcccatggcattggaaccctacc |
26462407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 663 - 754
Target Start/End: Complemental strand, 26462304 - 26462213
Alignment:
| Q |
663 |
atacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgagattttgttgtaaa |
754 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| || |||||| |||||| |
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| T |
26462304 |
atacatgtcaccatcttcaccagcccaaatcttacaaaagttacaaaaatcaatttttggtgaaacaggcatttcagatattttgctgtaaa |
26462213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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