View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_2D_high_9 (Length: 610)

Name: NF3151_2D_high_9
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_2D_high_9
NF3151_2D_high_9
[»] chr3 (26 HSPs)
chr3 (438-580)||(15039656-15039799)
chr3 (1-202)||(15039196-15039391)
chr3 (203-295)||(15039423-15039518)
chr3 (203-293)||(37681374-37681464)
chr3 (203-293)||(34413310-34413400)
chr3 (203-253)||(17583236-17583286)
chr3 (206-255)||(36637183-36637232)
chr3 (203-242)||(25441593-25441632)
chr3 (206-256)||(41835454-41835504)
chr3 (203-249)||(50585766-50585812)
chr3 (203-252)||(20037591-20037640)
chr3 (203-251)||(6835398-6835446)
chr3 (213-277)||(19226141-19226205)
chr3 (210-281)||(5846284-5846355)
chr3 (230-293)||(30333864-30333927)
chr3 (203-238)||(47410942-47410977)
chr3 (203-238)||(47411078-47411113)
chr3 (228-293)||(10613866-10613932)
chr3 (207-253)||(49428607-49428653)
chr3 (204-249)||(2594506-2594551)
chr3 (206-239)||(22934575-22934608)
chr3 (203-244)||(34230507-34230548)
chr3 (226-259)||(51940254-51940287)
chr3 (211-255)||(8231676-8231720)
chr3 (203-259)||(32828252-32828308)
chr3 (203-239)||(46851168-46851204)
[»] chr8 (18 HSPs)
chr8 (207-289)||(2442275-2442357)
chr8 (209-284)||(9183964-9184039)
chr8 (209-264)||(30567790-30567845)
chr8 (210-293)||(13766668-13766751)
chr8 (203-278)||(23870740-23870815)
chr8 (203-255)||(11420410-11420462)
chr8 (214-281)||(2442403-2442470)
chr8 (203-242)||(23038514-23038553)
chr8 (211-249)||(4437487-4437525)
chr8 (211-249)||(4438568-4438606)
chr8 (203-253)||(15920089-15920138)
chr8 (207-249)||(36067976-36068018)
chr8 (211-252)||(39131795-39131836)
chr8 (203-240)||(40721263-40721300)
chr8 (203-239)||(14449817-14449853)
chr8 (221-257)||(15172389-15172425)
chr8 (209-249)||(34103466-34103506)
chr8 (203-263)||(34151139-34151198)
[»] chr5 (21 HSPs)
chr5 (203-293)||(25537004-25537094)
chr5 (203-290)||(835646-835732)
chr5 (203-293)||(12095832-12095922)
chr5 (203-281)||(17705425-17705503)
chr5 (203-259)||(42522704-42522760)
chr5 (203-293)||(27175196-27175286)
chr5 (211-257)||(29663436-29663482)
chr5 (203-284)||(31364187-31364267)
chr5 (203-259)||(24090632-24090688)
chr5 (206-253)||(19840363-19840410)
chr5 (208-255)||(39850432-39850479)
chr5 (203-253)||(13998614-13998664)
chr5 (203-241)||(14000849-14000887)
chr5 (203-253)||(17822172-17822222)
chr5 (203-249)||(29686221-29686267)
chr5 (203-257)||(31314468-31314521)
chr5 (207-293)||(39178083-39178169)
chr5 (203-241)||(40693304-40693342)
chr5 (203-271)||(11832451-11832520)
chr5 (203-251)||(3165644-3165692)
chr5 (203-255)||(35373307-35373359)
[»] chr1 (24 HSPs)
chr1 (215-277)||(11080202-11080264)
chr1 (212-272)||(35112426-35112486)
chr1 (211-290)||(35056150-35056229)
chr1 (203-281)||(38339800-38339878)
chr1 (203-253)||(38340132-38340182)
chr1 (209-247)||(42825214-42825252)
chr1 (203-253)||(44717354-44717404)
chr1 (203-257)||(49840470-49840524)
chr1 (228-281)||(21967933-21967986)
chr1 (227-290)||(27972066-27972129)
chr1 (206-253)||(33129443-33129490)
chr1 (203-242)||(35633003-35633042)
chr1 (215-293)||(4353676-4353754)
chr1 (203-281)||(11067056-11067134)
chr1 (203-257)||(21966264-21966318)
chr1 (203-253)||(40780830-40780879)
chr1 (207-252)||(23749854-23749899)
chr1 (203-248)||(27348984-27349029)
chr1 (214-286)||(11461910-11461982)
chr1 (216-252)||(13288650-13288686)
chr1 (203-239)||(17248758-17248794)
chr1 (214-293)||(24612203-24612284)
chr1 (226-290)||(43115244-43115308)
chr1 (203-255)||(52675334-52675386)
[»] chr7 (26 HSPs)
chr7 (209-295)||(13703340-13703426)
chr7 (215-257)||(10039944-10039986)
chr7 (203-281)||(14623985-14624063)
chr7 (203-286)||(9059269-9059352)
chr7 (203-253)||(10039622-10039672)
chr7 (211-293)||(11485637-11485719)
chr7 (203-253)||(13640953-13641003)
chr7 (228-293)||(44549292-44549358)
chr7 (203-241)||(47437807-47437845)
chr7 (203-272)||(25603014-25603082)
chr7 (203-272)||(38237457-38237526)
chr7 (209-290)||(45634201-45634282)
chr7 (203-246)||(1292081-1292124)
chr7 (211-281)||(8145161-8145234)
chr7 (206-253)||(39959408-39959455)
chr7 (203-293)||(2475443-2475533)
chr7 (207-281)||(5318797-5318871)
chr7 (207-241)||(15647533-15647567)
chr7 (203-241)||(35338380-35338418)
chr7 (203-276)||(5789251-5789324)
chr7 (227-292)||(21305053-21305118)
chr7 (203-239)||(4492648-4492684)
chr7 (221-293)||(13640670-13640742)
chr7 (215-255)||(24650011-24650051)
chr7 (221-257)||(36471597-36471633)
chr7 (221-257)||(46452818-46452854)
[»] chr6 (17 HSPs)
chr6 (213-267)||(32570359-32570413)
chr6 (203-255)||(8866858-8866910)
chr6 (216-290)||(20603899-20603972)
chr6 (203-249)||(32279611-32279657)
chr6 (212-253)||(16436910-16436951)
chr6 (203-291)||(3533247-3533335)
chr6 (215-259)||(4578000-4578044)
chr6 (203-255)||(7980527-7980579)
chr6 (203-253)||(32937789-32937839)
chr6 (211-277)||(33490613-33490679)
chr6 (203-240)||(8872564-8872601)
chr6 (213-254)||(14912493-14912534)
chr6 (211-252)||(23649885-23649926)
chr6 (215-252)||(29178431-29178468)
chr6 (204-253)||(32939293-32939342)
chr6 (203-239)||(5414777-5414813)
chr6 (203-239)||(16241509-16241545)
[»] chr2 (16 HSPs)
chr2 (203-293)||(11538401-11538491)
chr2 (203-268)||(744884-744949)
chr2 (203-253)||(34983787-34983837)
chr2 (203-293)||(31525284-31525374)
chr2 (207-253)||(40303016-40303062)
chr2 (203-293)||(44856852-44856942)
chr2 (211-284)||(12599555-12599628)
chr2 (206-255)||(23914606-23914655)
chr2 (210-293)||(14706309-14706392)
chr2 (210-253)||(31054316-31054359)
chr2 (215-281)||(1071697-1071763)
chr2 (207-241)||(34423875-34423909)
chr2 (206-255)||(9740596-9740645)
chr2 (203-276)||(10643624-10643697)
chr2 (215-251)||(3752472-3752508)
chr2 (213-249)||(21925415-21925451)
[»] chr4 (22 HSPs)
chr4 (203-257)||(1237537-1237591)
chr4 (203-293)||(26492395-26492485)
chr4 (207-284)||(33997687-33997764)
chr4 (207-253)||(7712982-7713028)
chr4 (203-241)||(32820038-32820076)
chr4 (203-272)||(24916045-24916114)
chr4 (203-263)||(4505827-4505886)
chr4 (203-255)||(10564705-10564757)
chr4 (206-258)||(48458070-48458122)
chr4 (203-246)||(1014921-1014964)
chr4 (215-257)||(4608668-4608710)
chr4 (203-249)||(20004775-20004821)
chr4 (207-257)||(24670118-24670168)
chr4 (203-249)||(28704028-28704074)
chr4 (219-285)||(28715367-28715433)
chr4 (207-249)||(38490897-38490939)
chr4 (203-253)||(47683472-47683522)
chr4 (228-281)||(4379899-4379952)
chr4 (203-248)||(6028619-6028664)
chr4 (206-242)||(43028258-43028294)
chr4 (215-255)||(48458472-48458512)
chr4 (207-295)||(53354066-53354154)
[»] scaffold0003 (1 HSPs)
scaffold0003 (206-281)||(226359-226434)
[»] scaffold0018 (1 HSPs)
scaffold0018 (203-249)||(36818-36864)
[»] scaffold1017 (1 HSPs)
scaffold1017 (206-259)||(2029-2082)
[»] scaffold0025 (1 HSPs)
scaffold0025 (203-253)||(11696-11746)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 438 - 580
Target Start/End: Original strand, 15039656 - 15039799
Alignment:
Q  438 aatggttaaaatagttgattaatctt-agtttacaagtgttcaaatctacgtatggtttgttaatataatgttaaaacataacagttacacaacacaaat 536  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15039656 aatggttaaaatagttgattaatctttagtttacaagtgttcaaatctacgtatagtttgttaatataatgttaaaacataacagttacacaacacaaat 15039755  T
Q  537 agaagagaatagaaaaagttatgaaactttaccaatagaataat 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15039756 agaagagaatagaaaaagttatgaaactttaccaatagaataat 15039799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15039196 - 15039391
Alignment:
Q  1 tgattttcttgcgtgtgacacaatgcaatgatatattgtgaaaaaatgctgaataatgtgttcatttaccttagaccgaagcactatccatctccttaaa 100  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   | ||||| ||||||||||||    
T  15039196 tgattttcttgggtgagacacaatgcaatgatatagtgtgaaaaaatgctgaataatgtgttcatttaccttagacc---ggactattcatctccttaaa 15039292  T
Q  101 tgtttcttatnnnnnnnnnnnnnntcttatactatgctctgtatgtaaagaaaatagaggattttgacctggctttttatcattttaattacagtcttaa 200  Q
    ||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  15039293 tgtttcttat---aaaaaaaataatcttatactatgctctgtatgtaaagaaaatagaggattttgacctggctttttatcattgtaattacactcttaa 15039389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 15039423 - 15039518
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatatt---atatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgttgc 295  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  15039423 ttggtgttattaaaaaagataataatttatattattatatttgctatattattggtgttactgaaaaagataaacatgatttattgggtgtgttgc 15039518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 37681374 - 37681464
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||| |||||||||||||||  |||||||||||||||| || ||||||| ||||| ||| ||| ||||||||||||| |||||||||||    
T  37681374 ttggtggtattaaaaaagataaggatttatattatatttgttaaattattgttgttattgaaaaagataaacatgattttttgggtttgtt 37681464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 34413310 - 34413400
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    ||||||| ||| |||||||||||||||||||||||  ||| |||| |||| |||| ||||| | |||||||||||||||||| | ||||||    
T  34413310 ttggtgtcattcaaaaagataataatttatattattattgttatactatttgtgtcactgaaataaataaacatgatttatttgatttgtt 34413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 17583236 - 17583286
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  17583236 ttggtgttattaaaaaagataagaatttttattatatttgttatattattg 17583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 36637183 - 36637232
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  36637183 gtgttattaaaaaagataagaatttttattatatttgttatattattggt 36637232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 25441632 - 25441593
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttg 242  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  25441632 ttggtgatattaaaaaagataataatttatattatatttg 25441593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 41835504 - 41835454
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattggtg 256  Q
    |||| ||||||||| |||||||||||||||||| |||||||||| ||||||    
T  41835504 gtgtcattaaaaaatataataatttatattatagttgctatattgttggtg 41835454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 50585766 - 50585812
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  50585766 ttggtgttattcaaaaagataaaaatttatattatatttgttatatt 50585812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 20037640 - 20037591
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattatt 252  Q
    |||||||||||||||||||||| ||||  ||||||||||| |||||||||    
T  20037640 ttggtgttattaaaaaagataagaattattattatatttgatatattatt 20037591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 6835398 - 6835446
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattat 251  Q
    |||||| |||||||||||||| |||||||||||||||||| || |||||    
T  6835398 ttggtggtattaaaaaagatactaatttatattatatttgttaaattat 6835446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 19226141 - 19226205
Alignment:
Q  213 taaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatg 277  Q
    |||||||||||| ||||||||||||||||| || ||||||| ||| | ||| ||| |||||||||    
T  19226141 taaaaaagataaaaatttatattatatttgttaaattattgttgtcattgaaaaagataaacatg 19226205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 5846284 - 5846355
Alignment:
Q  210 tattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    |||||||||||||||  |||||||||||||||| || ||||||| | ||| ||| ||| ||||| |||||||    
T  5846284 tattaaaaaagataaagatttatattatatttgttaaattattgtttttattgaaaaagataaatatgattt 5846355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 30333927 - 30333864
Alignment:
Q  230 tatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    ||||||||||||| | |||| ||||||| | ||| ||| |||||||||||||||| ||||||||    
T  30333927 tatattatatttgttgtattgttggtgtcattgaaaaagataaacatgatttattaggtttgtt 30333864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 47410942 - 47410977
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattata 238  Q
    |||||||||||||||||||||| |||||||||||||    
T  47410942 ttggtgttattaaaaaagataagaatttatattata 47410977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 47411078 - 47411113
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattata 238  Q
    |||||||||||||||||||||| |||||||||||||    
T  47411078 ttggtgttattaaaaaagataagaatttatattata 47411113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 10613932 - 10613866
Alignment:
Q  228 tttatattatatttgctatattattggtgttactgagaaaaataaacatga-tttattgggtttgtt 293  Q
    ||||||||||||||| |||||||| | ||||| ||| ||||||||| |||| ||| |||||||||||    
T  10613932 tttatattatatttgttatattatagctgttattgaaaaaaataaatatgatttttttgggtttgtt 10613866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 49428607 - 49428653
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||||| ||||| | ||||||||| ||||||||||    
T  49428607 tgttattaaaaaagataagaatttttcttatatttgttatattattg 49428653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 2594506 - 2594551
Alignment:
Q  204 tggtgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    |||||| ||| |||||||||| ||||||||||||||||| ||||||    
T  2594506 tggtgtcattcaaaaagataagaatttatattatatttgttatatt 2594551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 22934608 - 22934575
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatat 239  Q
    ||||||||||||||||||| ||||||||||||||    
T  22934608 gtgttattaaaaaagataagaatttatattatat 22934575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 34230548 - 34230507
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgct 244  Q
    ||||||| ||| |||||||||| |||||||||||||||||||    
T  34230548 ttggtgtcattcaaaaagataagaatttatattatatttgct 34230507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 51940254 - 51940287
Alignment:
Q  226 aatttatattatatttgctatattattggtgtta 259  Q
    ||||||||||||||||| ||||||||||||||||    
T  51940254 aatttatattatatttgttatattattggtgtta 51940287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 8231720 - 8231676
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattattggt 255  Q
    |||||||||||||| |||||||||||||||| |||| || |||||    
T  8231720 attaaaaaagataagaatttatattatattttctattttgttggt 8231676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 32828308 - 32828252
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 259  Q
    ||||||||||| |||||| ||| ||||||||||||||||  || ||||||| |||||    
T  32828308 ttggtgttattgaaaaaggtaaaaatttatattatattttttaaattattgttgtta 32828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 46851168 - 46851204
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatat 239  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  46851168 ttggtgtcattcaaaaagataataatttatattatat 46851204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 2442275 - 2442357
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtt 289  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||| | | ||| ||| ||||||||||||| |||||||    
T  2442275 tgttattaaaaaagataaaaatttatattatatttgttatattattggtttcattgaaaaagataaacatgatttgttgggtt 2442357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 9184039 - 9183964
Alignment:
Q  209 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 284  Q
    |||||||||| |||||  |||||||||||||||| ||||| |||| ||||| ||| ||| ||||||||||||||||    
T  9184039 ttattaaaaatgataaggatttatattatatttgttatataattgttgttattgaaaaagataaacatgatttatt 9183964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 30567845 - 30567790
Alignment:
Q  209 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgag 264  Q
    |||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||    
T  30567845 ttattaaaaaagataataatttatattatatttgttaaattattgttgttattgag 30567790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 13766668 - 13766751
Alignment:
Q  210 tattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||| ||||||||  |||||||||||||||| || ||||||  ||||| ||| ||| |||||||| |||| |||||||||||    
T  13766668 tattaagaaagataaagatttatattatatttgttaaattattattgttaatgaaaaagataaacatcattttttgggtttgtt 13766751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 23870740 - 23870815
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatga 278  Q
    |||||| |||| ||||||||| | |||||||||||||||| || ||||||| ||||| ||| ||| ||||||||||    
T  23870740 ttggtgatattgaaaaagatattgatttatattatatttgttaaattattgttgttattgaaaaagataaacatga 23870815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 11420462 - 11420410
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    |||||||| || |||||||||| ||||||||||||||||| |||||| |||||    
T  11420462 ttggtgttgttcaaaaagataagaatttatattatatttgttatattgttggt 11420410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 2442403 - 2442470
Alignment:
Q  214 aaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| || ||| ||| |||||||| ||||    
T  2442403 aaaaaatataagaatttgtattatatttgttatattattggtgctattgaaaaagataaacataattt 2442470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 23038514 - 23038553
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttg 242  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  23038514 ttggtgttattaaaaaaggtaagaatttatattatatttg 23038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 4437525 - 4437487
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4437525 attaaaaaatataagaatttatattatatttgctatatt 4437487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 4438568 - 4438606
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatatt 249  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  4438568 attaaaaaagataagaatttatattatatttgttatatt 4438606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 15920089 - 15920138
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||| ||||| ||||| ||||||||||| ||||||||||    
T  15920089 ttggtgttattaaaaa-gataagaatttttattatatttgttatattattg 15920138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 36067976 - 36068018
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||| |||||||||| || |||||||||||||||||||||    
T  36067976 tgttatttaaaaagataagaacttatattatatttgctatatt 36068018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 39131795 - 39131836
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattatt 252  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  39131795 attaaaaaagataagaatatatattatatttgttatattatt 39131836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 40721263 - 40721300
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatt 240  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  40721263 ttggtgttattaaaaaaggtaagaatttatattatatt 40721300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 14449817 - 14449853
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatat 239  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  14449817 ttggtgtcatttaaaaagataataatttatattatat 14449853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 15172425 - 15172389
Alignment:
Q  221 ataataatttatattatatttgctatattattggtgt 257  Q
    |||| |||||||||||||||||||||||| |||||||    
T  15172425 ataagaatttatattatatttgctatattgttggtgt 15172389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 34103466 - 34103506
Alignment:
Q  209 ttattaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||||||| |||| ||||||||||||||||| ||||||    
T  34103466 ttattaaaaaatataaaaatttatattatatttgttatatt 34103506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 34151139 - 34151198
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactga 263  Q
    ||||||| ||| |||||||||| ||||||||||||||||  |||||| ||||||| |||||    
T  34151139 ttggtgtcatttaaaaagataagaatttatattatattt-ttatattgttggtgtcactga 34151198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 25537004 - 25537094
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||| || |||||||||||| |||||| |||||||||| || ||||||| ||||||||| ||| ||||||||| ||| |||||||||||    
T  25537004 ttggtggtactaaaaaagataagaatttacattatatttgttaaattattgttgttactgaaaaagataaacatggttttttgggtttgtt 25537094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 835646 - 835732
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 290  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||  ||| | | ||||||||||||||| ||| || |||||    
T  835646 ttggtgttattaaaaaatataataatttatattatatttgttaaattattattgtca-ttagaaaaataaacatggtttgttcggttt 835732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 293
Target Start/End: Complemental strand, 12095922 - 12095832
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||| |||| ||||||||||  |||||||||||||||| || |||||||   ||| ||| ||||||||||||| ||| |||||||||||    
T  12095922 ttggtggtattgaaaaagataaggatttatattatatttgttaaattattgtatttattgaaaaaaataaacatggttttttgggtttgtt 12095832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 17705425 - 17705503
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    |||||| | ||||||||||||| ||||||||||||||||| || ||||||  ||||| ||| ||| |||||||||||||    
T  17705425 ttggtggtgttaaaaaagataaaaatttatattatatttgttaaattattcttgttattgaaaaagataaacatgattt 17705503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 42522760 - 42522704
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 259  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||||||||| |||||    
T  42522760 ttggtgttattaaaaaatataagaatttttattatatttgttatattattgttgtta 42522704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 27175196 - 27175286
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||||||||||||||||||| ||||| | ||||||||| |||||||||  ||| | ||| ||| ||||| ||| ||| ||| |||||||    
T  27175196 ttggtgttattaaaaaagataagaatttttgttatatttgttatattattattgtcattgaaaaagataaatatggtttgttgagtttgtt 27175286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 29663436 - 29663482
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattattggtgt 257  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||    
T  29663436 attaaaaaagattataatttatattatatttgttatattgttggtgt 29663482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 31364267 - 31364187
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 284  Q
    |||||||| |||||||| ||||||||| |||||| ||||||||| || ||||||| | ||| | | ||||||||||||||||    
T  31364267 ttggtgtttttaaaaaatataataatt-atattacatttgctattttcttggtgtcattgaaatatataaacatgatttatt 31364187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 24090688 - 24090632
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 259  Q
    ||||||| ||| ||||||||||||||||||||  ||||||||| ||| |||||||||    
T  24090688 ttggtgtcattcaaaaagataataatttatatcttatttgctaaattgttggtgtta 24090632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 19840363 - 19840410
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||||||||| ||||| ||||||||||  ||||||||||    
T  19840363 gtgttattaaaaaagataagaatttttattatatttattatattattg 19840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 39850432 - 39850479
Alignment:
Q  208 gttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||||||||| ||||| ||||||||||||||||  ||||||||||||    
T  39850432 gttattaaaaatgataagaatttatattatatttattatattattggt 39850479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 13998664 - 13998614
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||||| |||||||||||| | ||||||||  ||||||||||    
T  13998664 ttggtgttattaaaatagataataatttttgttatatttattatattattg 13998614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 14000887 - 14000849
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatattt 241  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  14000887 ttggtgtcattaaaaaagataaaaatttatattatattt 14000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 17822222 - 17822172
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||| |||||||||| ||||| | ||||||||| ||||||||||    
T  17822222 ttggtgttattgaaaaagataagaatttttgttatatttgttatattattg 17822172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 29686267 - 29686221
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||| ||| |||||||||| ||||||||||||||||| ||||||    
T  29686267 ttggtgtcattcaaaaagataagaatttatattatatttgttatatt 29686221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 31314521 - 31314468
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 257  Q
    |||||||| |||||||| ||||||||| |||||||||||||||| || |||||||    
T  31314521 ttggtgtttttaaaaaatataataatt-atattatatttgctattttgttggtgt 31314468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 39178169 - 39178083
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||| || ||| | ||| ||| ||||| ||| ||| || ||||||||    
T  39178169 tgttattaaaatagataataatttttgttatatttgttatattactgttgtcattgaaaaagataaatatggtttgtttggtttgtt 39178083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 40693342 - 40693304
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatattt 241  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  40693342 ttggtgttattaaaaaatataagaatttatattatattt 40693304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 11832451 - 11832520
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatat-ttgctatattattggtgttactgagaaaaata 271  Q
    ||||||| |||||||||||||| |||||||||||||| ||  |||||| ||||||| | ||| |||||||    
T  11832451 ttggtgtcattaaaaaagataagaatttatattatatatttttatattgttggtgtaattgaaaaaaata 11832520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 3165644 - 3165692
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattat 251  Q
    ||||||||||||||||| |||| |||| || |||||||| |||||||||    
T  3165644 ttggtgttattaaaaaatataaaaattcatgttatattttctatattat 3165692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 35373307 - 35373359
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||||||||  |||||||||| ||||| ||||||||||| |||||| |||||    
T  35373307 ttggtgttatagaaaaagataagaatttttattatatttgttatattgttggt 35373359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 11080202 - 11080264
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatg 277  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  11080202 aaaaagataataatttatattatatttgatatattattggtgtcattgaaaaaaataaacatg 11080264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 35112426 - 35112486
Alignment:
Q  212 ttaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 272  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  35112426 ttaaaaaagataagaatttatattatatttgctatattattagtgttattgaaaaagataa 35112486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 35056229 - 35056150
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 290  Q
    ||||||| | |||| ||||||||| ||||||| |||||||||||||| | ||| ||| ||||||||||||| ||||||||    
T  35056229 attaaaataaataagaatttatatcatatttgatatattattggtgtcattgaaaaagataaacatgatttgttgggttt 35056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 38339878 - 38339800
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    |||||| |||||||||||||||  ||||||||||||| || || |||| || ||||| ||| ||| |||||||||||||    
T  38339878 ttggtggtattaaaaaagataaagatttatattatatatgttaaattactgttgttattgaaaaagataaacatgattt 38339800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 38340132 - 38340182
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||||||||| ||||| ||||| ||||| ||||||||||    
T  38340132 ttggtgttattaaaaaagataagaatttttattacatttgttatattattg 38340182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 42825214 - 42825252
Alignment:
Q  209 ttattaaaaaagataataatttatattatatttgctata 247  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  42825214 ttattaaaaaagataataatttatattataattgctata 42825252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 44717404 - 44717354
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||||||||| ||||| |||| |||||| ||||||||||    
T  44717404 ttggtgttattaaaaaagataagaatttttattttatttgttatattattg 44717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 49840524 - 49840470
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 257  Q
    ||||||| ||||||||| |||| ||| ||||||||||||| ||||||||||||||    
T  49840524 ttggtgtcattaaaaaatataagaatgtatattatatttgttatattattggtgt 49840470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 21967933 - 21967986
Alignment:
Q  228 tttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    ||||||||||||||  |||||||||| ||||| ||| |||||||||||||||||    
T  21967933 tttatattatattttttatattattgctgttattgaaaaaaataaacatgattt 21967986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 27972129 - 27972066
Alignment:
Q  227 atttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 290  Q
    |||||||||| ||||| || ||||||| ||||| ||| ||| ||||||||||||| ||||||||    
T  27972129 atttatattaaatttgttaaattattgttgttattgaaaaagataaacatgattttttgggttt 27972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 33129443 - 33129490
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||||||| | ||||||||||||||||| || |||||||    
T  33129443 gtgttattaaaaaagatgagaatttatattatatttgttaaattattg 33129490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 35633003 - 35633042
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttg 242  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  35633003 ttggtgttattaaaaaatataagaatttatattatatttg 35633042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 4353754 - 4353676
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||||||| |||| |||| |||||||||||||| ||  ||||| ||| ||| | ||||||||||| || ||||||||    
T  4353754 aaaaagataagaattaatatcatatttgctatattgtttttgttattgaaaaagaaaaacatgatttgtttggtttgtt 4353676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 11067134 - 11067056
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    |||||||||||||||||||||| ||||| | ||||||||  |||||||||  ||| | ||| ||| ||||| |||||||    
T  11067134 ttggtgttattaaaaaagataagaatttttgttatattttttatattattattgtcattgaaaaatataaatatgattt 11067056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 21966264 - 21966318
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 257  Q
    ||||||| ||| |||||||||| ||||||||||||||||| || ||| |||||||    
T  21966264 ttggtgtcattcaaaaagataagaatttatattatatttgttacattgttggtgt 21966318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 40780830 - 40780879
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||||||||| |||||||| |||||||| |||| |||||    
T  40780830 ttggtgttattaaaaaagataagaatttata-tatatttgttatactattg 40780879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 23749899 - 23749854
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattatt 252  Q
    ||||||| || ||||||||||||||||||||||||  |||||||||    
T  23749899 tgttattcaataagataataatttatattatatttattatattatt 23749854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 27348984 - 27349029
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatat 248  Q
    ||||||| ||| ||||| |||||||||||||||||||||| |||||    
T  27348984 ttggtgtcattcaaaaatataataatttatattatatttgttatat 27349029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 11461982 - 11461910
Alignment:
Q  214 aaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgg 286  Q
    |||||||||||  |||| ||||||||||| || |||| || ||||| ||| ||| ||||||||||||| ||||    
T  11461982 aaaaaagataaggatttgtattatatttgttaaattactgttgttattgaaaaagataaacatgattttttgg 11461910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 13288650 - 13288686
Alignment:
Q  216 aaaagataataatttatattatatttgctatattatt 252  Q
    |||| |||| |||||||||||||||||||||||||||    
T  13288650 aaaaaataagaatttatattatatttgctatattatt 13288686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 17248794 - 17248758
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatat 239  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  17248794 ttggtgttatttaaaaagataagaatttatattatat 17248758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 24612284 - 24612203
Alignment:
Q  214 aaaaaagataataatttatattatatttgctatattattggtgttactgagaaa---aataaacatgatttattgggtttgtt 293  Q
    |||||| |||||||||| ||||||||||||||||||||| |||| | ||| |||    ||||||||||||| || ||||||||    
T  24612284 aaaaaatataataattt-tattatatttgctatattatttgtgtcattgaaaaagatcataaacatgatttgttaggtttgtt 24612203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 43115244 - 43115308
Alignment:
Q  226 aatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 290  Q
    |||||||||||||||||| |||| |||||||| | | | ||| |||||||| |||| ||||||||    
T  43115244 aatttatattatatttgcaatatcattggtgtcattaaaaaagataaacataatttgttgggttt 43115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 52675334 - 52675386
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||||||||| |||||||||| ||||| ||| ||||||| |||||| |||||    
T  52675334 ttggtgttattgaaaaagataagaatttttatcatatttgttatattgttggt 52675386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 13703340 - 13703426
Alignment:
Q  209 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgttgc 295  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||| ||| | ||| ||| ||||| ||||||| ||| |||||||||    
T  13703340 ttattaaaaaagatgataatttttattatatttgttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgttgc 13703426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 10039986 - 10039944
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggtgt 257  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  10039986 aaaaagataataatttatattatatttgctatattgttggtgt 10039944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 14624063 - 14623985
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    |||||| | ||||||||||||| ||||||||||||||||| || |||| |  ||||| ||| |||||||||||||||||    
T  14624063 ttggtggtgttaaaaaagataaaaatttatattatatttgttaaattactcttgttattgaaaaaaataaacatgattt 14623985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 9059352 - 9059269
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgg 286  Q
    ||||||||||||||||||||||  |||||||||||||||  || |||| || ||||| ||| ||| ||||||||| ||| ||||    
T  9059352 ttggtgttattaaaaaagataaagatttatattatatttattaaattactgttgttattgaaaaagataaacatggttttttgg 9059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 10039672 - 10039622
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||| |||| ||||||||| |||||||||||||||| |||||||||||    
T  10039672 ttggtgtcattagaaaagataaaaatttatattatattttctatattattg 10039622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 11485637 - 11485719
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    ||||||||||||||  ||||||||||||| || || |||| || || || ||| |||||||||||||| || |||||||||||    
T  11485637 attaaaaaagataaggatttatattatatatgttaaattactgttgctattgaaaaaaataaacatgaatttttgggtttgtt 11485719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 13640953 - 13641003
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||    
T  13640953 ttggttttattaaaaaagatgataatttttattatatttgttatattattg 13641003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 44549358 - 44549292
Alignment:
Q  228 tttatattatatttgctatattattggtgttactgagaaaaataaacatga-tttattgggtttgtt 293  Q
    ||||||||||||||| |||||||||| ||||| ||| ||| |||||||||| ||| |||||||||||    
T  44549358 tttatattatatttgttatattattgatgttattgaaaaagataaacatgatttttttgggtttgtt 44549292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 47437845 - 47437807
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatattt 241  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  47437845 ttggtgttattaaaaaagataagaatttatattatattt 47437807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 25603082 - 25603014
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 272  Q
    ||||||| ||||||||| |||| ||||| ||||||||||| |||| ||||| |||||| |||||||||||    
T  25603082 ttggtgtgattaaaaaa-ataagaatttttattatatttgatataatattgatgttaccgagaaaaataa 25603014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 38237526 - 38237457
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 272  Q
    ||||||| ||| |||||||||| ||||||||||||||||| |||||| || |||| | ||| ||||||||    
T  38237526 ttggtgtcattgaaaaagataagaatttatattatatttgttatattgtttgtgtcattgaaaaaaataa 38237457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 45634282 - 45634201
Alignment:
Q  209 ttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 290  Q
    |||||||||||||||   ||||| ||||||||||||| ||||||| ||||| ||| ||| ||||||| | ||| ||||||||    
T  45634282 ttattaaaaaagatagggatttacattatatttgctaaattattgttgttattgaaaaatataaacacggttttttgggttt 45634201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 1292124 - 1292081
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctat 246  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||    
T  1292124 ttggtgtcattaaaaaagataagaatttatattatattttctat 1292081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 8145161 - 8145234
Alignment:
Q  211 attaaaaaagataataatttatattata---tttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    ||||||||| |||| |||||||||||||   ||||||||||| ||||||| | ||| ||| |||||||||||||    
T  8145161 attaaaaaatataagaatttatattatactatttgctatattgttggtgtcattgaaaaagataaacatgattt 8145234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 39959408 - 39959455
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||||||||    
T  39959408 gtgtcattcaaaaaaataataatttatattatatttgttatattattg 39959455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 2475443 - 2475533
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    ||||||||| |||||||||||| ||||| ||||||||||  || ||||||| |||   ||| ||||||||| || |||| ||| |||||||    
T  2475443 ttggtgttactaaaaaagataagaatttttattatatttattacattattgttgtcgttgaaaaaaataaatataatttgttgagtttgtt 2475533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 5318797 - 5318871
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    ||||||||||||  |||| |||||||||||| |||| |||||| |||||||   ||  |||||||||||||||||    
T  5318797 tgttattaaaaagtataagaatttatattatgtttgttatattgttggtgtctttggaaaaaataaacatgattt 5318871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 15647533 - 15647567
Alignment:
Q  207 tgttattaaaaaagataataatttatattatattt 241  Q
    |||||||||||||||||| ||||||||||||||||    
T  15647533 tgttattaaaaaagataaaaatttatattatattt 15647567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 35338380 - 35338418
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatattt 241  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  35338380 ttggtgtcattaaaaaagataagaatttatattatattt 35338418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 5789251 - 5789324
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacat 276  Q
    |||||| ||||||||||||||   |||||||||||||||| || ||||||| ||||| ||| ||| ||| ||||    
T  5789251 ttggtggtattaaaaaagatacagatttatattatatttgttaaattattgttgttattgaaaaatatatacat 5789324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 21305118 - 21305053
Alignment:
Q  227 atttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgt 292  Q
    ||||||||||||||||||||||| ||||||| | | | || || ||| ||||||| ||||||||||    
T  21305118 atttatattatatttgctatattgttggtgtcattaaaaagaacaaatatgatttgttgggtttgt 21305053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 4492648 - 4492684
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatat 239  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  4492648 ttggtgttatttaaaaagataagaatttatattatat 4492684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 13640670 - 13640742
Alignment:
Q  221 ataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||| ||||||||||||||||| || ||||||| ||||| ||  ||| ||||||||| ||| ||| |||||||    
T  13640670 ataagaatttatattatatttgttaaattattgttgttattgtaaaagataaacatggtttgttgagtttgtt 13640742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 24650011 - 24650051
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggt 255  Q
    |||||||||| ||||||||||||||||| |||||| |||||    
T  24650011 aaaaagataagaatttatattatatttgttatattgttggt 24650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 36471633 - 36471597
Alignment:
Q  221 ataataatttatattatatttgctatattattggtgt 257  Q
    |||||||||||||||||||||| |||||| |||||||    
T  36471633 ataataatttatattatatttgttatattgttggtgt 36471597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 46452818 - 46452854
Alignment:
Q  221 ataataatttatattatatttgctatattattggtgt 257  Q
    |||| |||||||||||||||| |||||||||||||||    
T  46452818 ataaaaatttatattatattttctatattattggtgt 46452854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 32570413 - 32570359
Alignment:
Q  213 taaaaaagataataatttatattatatttgctatattattggtgttactgagaaa 267  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  32570413 taaaaaagataagaatttatattatatttgctatattattggtgtgattgagaaa 32570359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 8866910 - 8866858
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||| |||||    
T  8866910 ttggtgtcattaaaaaagataagaatttatattatatttgttatattgttggt 8866858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 20603899 - 20603972
Alignment:
Q  216 aaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggttt 290  Q
    ||||||||||||||| ||||||||||| |||||||||||| |   ||| ||| ||||||||||||| ||||||||    
T  20603899 aaaagataataattt-tattatatttgttatattattggtttcgttgaaaaagataaacatgattttttgggttt 20603972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 32279657 - 32279611
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  32279657 ttggtgtcattaaaaaagataagaatttatattatatttgttatatt 32279611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 16436951 - 16436910
Alignment:
Q  212 ttaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  16436951 ttaaaaaagataagaatttatattatattttctatattattg 16436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 3533247 - 3533335
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttg 291  Q
    ||||||||||||||||| |||| || | |||||||||||  |||||||||| ||| | ||  ||| ||||||||||||| ||| |||||    
T  3533247 ttggtgttattaaaaaaaataagaaatcatattatattttttatattattgatgtcattggaaaagataaacatgatttgttgagtttg 3533335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 4578044 - 4578000
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggtgtta 259  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  4578044 aaaaagataagaatttatattatatttgctatattgttagtgtta 4578000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 7980527 - 7980579
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||| |||||||||||||||| ||||| ||||||||||| | ||||||||||    
T  7980527 ttggttttattaaaaaagataagaatttttattatatttgttttattattggt 7980579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 32937789 - 32937839
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||| |||||||| ||| ||||||||||||||||| || |||||||    
T  32937789 ttggtgttactaaaaaaggtaagaatttatattatatttgttagattattg 32937839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 33490613 - 33490679
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatg 277  Q
    |||||||| ||||| ||||||||||||||||| |||||||  ||||| | ||| | |||||||||||    
T  33490613 attaaaaaggataacaatttatattatatttgatatattaacggtgtgattgaaataaataaacatg 33490679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 8872601 - 8872564
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatt 240  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  8872601 ttggtgtcattaaaaaagataagaatttatattatatt 8872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 14912534 - 14912493
Alignment:
Q  213 taaaaaagataataatttatattatatttgctatattattgg 254  Q
    |||||||||||| ||||||||||||||||| | |||||||||    
T  14912534 taaaaaagataaaaatttatattatatttgttttattattgg 14912493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 23649926 - 23649885
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattatt 252  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  23649926 attaaaaaatataagaatttatattatattttctatattatt 23649885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 29178431 - 29178468
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattatt 252  Q
    ||||||| || |||||||||||||||||||||||||||    
T  29178431 aaaaagacaagaatttatattatatttgctatattatt 29178468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 32939293 - 32939342
Alignment:
Q  204 tggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||||| ||||| ||||| |||||||||||  |||||||||    
T  32939293 tggtgttattaaaaaggataagaatttttattatatttgtcatattattg 32939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 5414777 - 5414813
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatat 239  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  5414777 ttggtgttatttaaaaagataagaatttatattatat 5414813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 16241545 - 16241509
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatat 239  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  16241545 ttggtgtcattaaaaatgataataatttatattatat 16241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 11538401 - 11538491
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||| |||| ||| | ||| ||||||||| ||| ||| ||| |||||||    
T  11538401 ttggtgttattaaaaaagataagaatttttgttatatttgctatatgattgttgtcattgaaaaaaataaatatggtttgttgagtttgtt 11538491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 744949 - 744884
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaa 268  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| ||| | ||| ||||||||    
T  744949 ttggtgttatttaaaaagataaaaatttatattatatttgctatattgttgatcttattgagaaaa 744884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 34983787 - 34983837
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  34983787 ttggtgttattaaaaaagaaaataatttttattatatttgttatattattg 34983837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 31525284 - 31525374
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||| |||||||||||||||  |||||||||||||||| ||  |||||| ||||  ||| ||| ||||||||| ||| ||| |||||||    
T  31525284 ttggtggtattaaaaaagataaggatttatattatatttgttaacttattgttgtttttgaaaaagataaacatggttttttgagtttgtt 31525374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 40303062 - 40303016
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  40303062 tgttattaaaaaagataagaatttttattatatttgttatattattg 40303016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 293
Target Start/End: Complemental strand, 44856942 - 44856852
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    ||||||||||| |||||||||| ||||| | ||||||||| |||||||||| ||| | ||| |||  |||| ||||||| ||| |||||||    
T  44856942 ttggtgttatttaaaaagataagaatttttgttatatttgttatattattgttgtcattgaaaaatgtaaatatgatttgttgagtttgtt 44856852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 12599555 - 12599628
Alignment:
Q  211 attaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 284  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||| | | ||| ||| ||||| || |||||||    
T  12599555 attaagaaagataagaatttatattatatttgttatattattggtataattgaaaaagataaatataatttatt 12599628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 23914606 - 23914655
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    |||||||| |||||||||| ||||||||||||||||| |||||| |||||    
T  23914606 gtgttattgaaaaagataagaatttatattatatttgttatattgttggt 23914655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 14706309 - 14706392
Alignment:
Q  210 tattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    ||||||| |||||||| ||||||||| |||||| || |||| || ||||| ||| ||| |||||  |||||| |||||||||||    
T  14706309 tattaaagaagataatgatttatattgtatttgttaaattactgttgttattgaaaaagataaaactgattttttgggtttgtt 14706392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 31054316 - 31054359
Alignment:
Q  210 tattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||||| ||||||||||||||||| || |||||||    
T  31054316 tattaaaaaagataagaatttatattatatttgttaaattattg 31054359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 1071697 - 1071763
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    ||||| |||| ||||||||||||||||| |||||| || |||| | ||| ||| |||||||||||||    
T  1071697 aaaaaaataagaatttatattatatttgttatattgttagtgtcattgaaaaatataaacatgattt 1071763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 34423875 - 34423909
Alignment:
Q  207 tgttattaaaaaagataataatttatattatattt 241  Q
    |||||||||||||||||| ||||||||||||||||    
T  34423875 tgttattaaaaaagataagaatttatattatattt 34423909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 9740645 - 9740596
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||||||||||| ||||| ||||| ||||||||||| || |||||||||    
T  9740645 gtgttattaaaaatgataagaatttttattatatttgttacattattggt 9740596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 10643624 - 10643697
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacat 276  Q
    ||||||| ||| |||| ||||||||||||||||||||||  |||||| ||||| |   ||| ||||||||||||    
T  10643624 ttggtgtgattgaaaacgataataatttatattatatttattatattgttggtatcgttgaaaaaaataaacat 10643697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 3752508 - 3752472
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattat 251  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  3752508 aaaaagataagaatttatattacatttgctatattat 3752472  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 21925451 - 21925415
Alignment:
Q  213 taaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||||||||  |||||||||||||||||||||||    
T  21925451 taaaaaagataaggatttatattatatttgctatatt 21925415  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 1237537 - 1237591
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgt 257  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||    
T  1237537 ttggtgtcattaaaaaagataagaatttatattatattttctatattgttggtgt 1237591  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 26492395 - 26492485
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgtt 293  Q
    |||||| | |||||||||||||  ||||||| |||||||| || ||||||| |||||||   ||| ||||||||||||| |||||||||||    
T  26492395 ttggtggtgttaaaaaagataaggatttatactatatttgttaaattattgttgttacttgaaaagataaacatgattttttgggtttgtt 26492485  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 33997764 - 33997687
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttatt 284  Q
    |||||| |||||| |||| ||||||||||||||||| |||||||||| ||| |  || ||| ||||||||||||||||    
T  33997764 tgttatgaaaaaaaataagaatttatattatatttgttatattattgatgtcatcgaaaaagataaacatgatttatt 33997687  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 7712982 - 7713028
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  7712982 tgttattaaaaaagataatgatttttattatatttgttatattattg 7713028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 32820076 - 32820038
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatattt 241  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  32820076 ttggtgttattaaaaaagataaaaatttatattatattt 32820038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 24916045 - 24916114
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataa 272  Q
    ||||||| ||||||||||| || || |||||||||||||| |||||||||| ||||| ||| ||| ||||    
T  24916045 ttggtgtcattaaaaaagaaaagaaattatattatatttgttatattattgttgttattgaaaaagataa 24916114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 4505827 - 4505886
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggtgttactga 263  Q
    ||||||| ||| |||||||||| ||||||||||||||||  |||||| |||||||||||||    
T  4505827 ttggtgtcattcaaaaagataagaatttatattatattt-ttatattgttggtgttactga 4505886  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 10564705 - 10564757
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||| |||||||||||||||||||||||||||| ||||  |||||| |||||    
T  10564705 ttggtattattaaaaaagataataatttatattaaatttattatattgttggt 10564757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 48458070 - 48458122
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattggtgtt 258  Q
    ||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||    
T  48458070 gtgttattaaaaaagataagactttatattatatttgttatattgttgatgtt 48458122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 1014921 - 1014964
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctat 246  Q
    ||||||| |||||||||||| | |||||||||||||||||||||    
T  1014921 ttggtgtcattaaaaaagatcaaaatttatattatatttgctat 1014964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 4608710 - 4608668
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggtgt 257  Q
    |||||||||| ||||||||||||||||| |||||| |||||||    
T  4608710 aaaaagataagaatttatattatatttgttatattgttggtgt 4608668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 20004821 - 20004775
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||| ||||||||| |||| ||||||||||||||||| ||||||    
T  20004821 ttggtgtcattaaaaaatataagaatttatattatatttgttatatt 20004775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 24670118 - 24670168
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattggtgt 257  Q
    ||||||| |||||||||| ||||||||||||||||  |||||| |||||||    
T  24670118 tgttatttaaaaagataagaatttatattatattttatatattgttggtgt 24670168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 28704074 - 28704028
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    ||||||| |||||||||||| | ||||||||| ||||||||||||||    
T  28704074 ttggtgtcattaaaaaagatgagaatttatataatatttgctatatt 28704028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 28715433 - 28715367
Alignment:
Q  219 agataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattg 285  Q
    |||||| ||||||||||| |||||||||||| ||||||| | ||| ||||||||  || ||||||||    
T  28715433 agataagaatttatattacatttgctatattgttggtgtcattgaaaaaaataagtataatttattg 28715367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 38490939 - 38490897
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||    
T  38490939 tgttattaaaaaagataagaatttgtattatatttgttatatt 38490897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 47683472 - 47683522
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    ||||||| ||| ||||| |||| ||||||||||||||||| ||||||||||    
T  47683472 ttggtgtcattcaaaaatataagaatttatattatatttgttatattattg 47683522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 4379952 - 4379899
Alignment:
Q  228 tttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    ||||||||||| || ||||||||||| ||||| ||| ||| |||||||||||||    
T  4379952 tttatattatacttactatattattgatgttattgaaaaagataaacatgattt 4379899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 6028664 - 6028619
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatat 248  Q
    ||||||| |||||||||||||| |||||||||||||| | ||||||    
T  6028664 ttggtgtcattaaaaaagataagaatttatattatatgtactatat 6028619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 43028294 - 43028258
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttg 242  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  43028294 gtgttattcaaaaagataataatttatattgtatttg 43028258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 48458472 - 48458512
Alignment:
Q  215 aaaaagataataatttatattatatttgctatattattggt 255  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  48458472 aaaaaaataagaatttatattatatttgttatattattggt 48458512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 53354154 - 53354066
Alignment:
Q  207 tgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgatttattgggtttgttgc 295  Q
    |||||||||||||||||| ||||| | ||||||||| ||||| |||| ||| | ||| ||| ||||| ||| |||  || |||||||||    
T  53354154 tgttattaaaaaagataagaatttttgttatatttgttatataattgttgtcattgaaaaagataaatatggttttgtgagtttgttgc 53354066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 226434 - 226359
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattggtgttactgagaaaaataaacatgattt 281  Q
    |||||||||||||| |||| ||||| ||||||||||| || ||||||| ||| | ||| ||||||||| |||||||    
T  226434 gtgttattaaaaaaaataagaatttttattatatttgttacattattgttgtcattgaaaaaaataaatatgattt 226359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 36818 - 36864
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatatt 249  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  36818 ttggtgttattaaaaaagataagaatttttattatatttgttatatt 36864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 2082 - 2029
Alignment:
Q  206 gtgttattaaaaaagataataatttatattatatttgctatattattggtgtta 259  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||| || |||||    
T  2082 gtgttattaaaaaagataagaatttttattatatttgttatattaatgttgtta 2029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 11696 - 11746
Alignment:
Q  203 ttggtgttattaaaaaagataataatttatattatatttgctatattattg 253  Q
    |||||||||||||||||||||| ||||| | ||||||||  ||||||||||    
T  11696 ttggtgttattaaaaaagataagaatttttgttatatttattatattattg 11746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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