View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_10 (Length: 745)
Name: NF3151_2D_low_10
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 292 - 698
Target Start/End: Complemental strand, 41263427 - 41263020
Alignment:
| Q |
292 |
aactaataactctcaatagtaatcctcnnnnnnncttcaaacgcttacacactaatgaagaaactttgtccttctaatgtggcttcctcaactcctccaa |
391 |
Q |
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| T |
41263427 |
aactaataactctcaatagtaattctctttttttcttcaaacgcttacacactaatgaagaaactttgtccttctaatgtggcttcctcaactcctccaa |
41263328 |
T |
|
| Q |
392 |
agagtgtaaagtttgacaaaagatttttgagaactaaaatgctacaaaaatataaaagcagnnnnnnnntataggtaaattgcaagtaaagtaacctatt |
491 |
Q |
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| T |
41263327 |
agagtgtaaagtttgacaaaagatttttgagaactaaaatgctacaaaaatataaaagcagaaaaaaa-tataggtaaattgcaagtaaagtaacctatt |
41263229 |
T |
|
| Q |
492 |
tgattgtcctaattctccaatttgcatagttgatattcttaattcttccaagaccatgtcgttccttcacctccataagcactacaacaacattgtggtg |
591 |
Q |
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| T |
41263228 |
tgattgtcctaattctccaatttgcatagttgatagtcttaattcttccaagaccatgtcgttccttcacctccataagcactacaacaacattgtggtg |
41263129 |
T |
|
| Q |
592 |
tcgttgcaaatatgatctggcaaacctgcataaaagg--ggggaaatgcaattttagaatttctcctttgtctctatcattcagcaacatgttaattgta |
689 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41263128 |
tcgttgcaaatatgatctggcaaacctgcataaaaggggggggaaatgcaattttagaatttctcctttgtctctatcattcagcaacatgttaattgta |
41263029 |
T |
|
| Q |
690 |
tcccatttc |
698 |
Q |
| |
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||||||||| |
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| T |
41263028 |
tcccatttc |
41263020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 41263743 - 41263442
Alignment:
| Q |
7 |
tgtcgagtttggtgttagaggtttaaaatctattattcgattacatgtacgttgtcgtgagctttcctaagtttatggttgatattttatggatctcttt |
106 |
Q |
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|||| |||| || ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| |||||| |||||||||||||||| |
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| T |
41263743 |
tgtcaagttaggagttagagatttaaaatctattattcgattacatgtacgttatcgtaagctttcctaaatttatagttgatgttttatggatctcttt |
41263644 |
T |
|
| Q |
107 |
tatgttttttcctctttctcatgtaagaaaagaaaaaatataattgatcatttttattatattatacgttacattttgattttgcatcaaaatgtca-cn |
205 |
Q |
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| T |
41263643 |
tatgttttttcctctttctcatgtaagaaaagaaaaaatataattgatcatttttattatattatacgttacat------tttgcatcaaaatgtcattt |
41263550 |
T |
|
| Q |
206 |
nnnnnnnnnnnacggtaacatttcactttattgtagctatatgctattagtatttattattgaacataaaagttagttgagtattcaactaataactctc |
305 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41263549 |
tttttttttttacggtaacatttcactttattgtagctatatactattagtatttattattgaacataaaagttagttgagtattcaactaataactctc |
41263450 |
T |
|
| Q |
306 |
aatagtaa |
313 |
Q |
| |
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||| |||| |
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| T |
41263449 |
aattgtaa |
41263442 |
T |
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