View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_17 (Length: 615)
Name: NF3151_2D_low_17
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 202 - 596
Target Start/End: Original strand, 14597098 - 14597492
Alignment:
| Q |
202 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
301 |
Q |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
|
| Q |
302 |
gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaacacctcctggacgtccatacctgacgttaggatgatctgcaagag |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597198 |
gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaacacctcctggacgtccatacctgacgttaggatgatctgcaagag |
14597297 |
T |
|
| Q |
402 |
ggcgaccttggaactcagcgactggtatgctatcagccaacatggatgaattaccgaatcgcttgggcaacaagtttgaatctaaatcttgatcaaactc |
501 |
Q |
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| T |
14597298 |
ggcgaccttggaactcagcgactggtatgctatcagccaacatggatgaattaccaaatcgcttgggcaacaagtttgaatctaaatcttgatcaaactc |
14597397 |
T |
|
| Q |
502 |
actggcattcaaggccggtgtagtttcacagacttcatccgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatc |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597398 |
actggcattcaaggccggtgtagtttcacagacttcatccgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatc |
14597492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 14596985 - 14597047
Alignment:
| Q |
89 |
tcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
151 |
Q |
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| T |
14596985 |
tcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
14597047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 14611585 - 14611523
Alignment:
| Q |
89 |
tcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
151 |
Q |
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| T |
14611585 |
tcactgatccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 23776787 - 23776727
Alignment:
| Q |
20 |
cttttcttgtttttctcctgatgatgatggatgatttaagccaacaacgtaatcacaggttctg |
83 |
Q |
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| T |
23776787 |
cttttcttgtttttctcctgatgatg---gattatttaagccaacaacgtaatcacagggtctg |
23776727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 32298332 - 32298364
Alignment:
| Q |
44 |
tgatggatgatttaagccaacaacgtaatcaca |
76 |
Q |
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| T |
32298332 |
tgatggatgatttaagccaacaacgtaatcaca |
32298364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 12192808 - 12192859
Alignment:
| Q |
94 |
gacccataaatccatcccactctttctccccattctgtcttgtcttcatacc |
145 |
Q |
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| T |
12192808 |
gacccgtaaatccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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