View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_23 (Length: 560)
Name: NF3151_2D_low_23
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 47918265 - 47918800
Alignment:
| Q |
1 |
agggtgatccttacaaaaacaaagtgaaaccagattttgtgaaggattgtagaaggctgaagcgcgagtatgatgagtttaaggtcaaaatcaatggttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47918265 |
agggtgatccttacaaaaacaaagtgaaactagattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagtttaaggtcaaaatcaatggttt |
47918364 |
T |
|
| Q |
101 |
tcccgactctatccgtcgcaggtcagatgcttttcacgcaagtgaggaaaacaagaccatgaatcagagacaaaataggggagatgaacctgttgagcct |
200 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918365 |
tcccgactctatccatcgcaggtcagatgcttttcacgcaagtgaggaaaacaagaccatgaatcagagacaaaataggggagatgaacctgttgagcct |
47918464 |
T |
|
| Q |
201 |
ataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagcttttgaaattgctgctgcaatctatgatattataaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918465 |
ataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagcttttgaaattgctgctgcaatctatgatattataaaaa |
47918564 |
T |
|
| Q |
301 |
attgcagtcagagtattagtaatataaatcaagattatannnnnnnctttccattttct-cacgtttatttctgtccaattctatctgaagtgaaagagt |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| |||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
47918565 |
attgcagtcagagtattagtaatataaatcaagattata--------ttt---ttttatgtatatttatttctgtccaattctatctgaagtgaaagagt |
47918653 |
T |
|
| Q |
400 |
ttttatgtataaactcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgtcaaatgcggcttatacattc |
499 |
Q |
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| T |
47918654 |
ttttatgtataaactcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgtcaaatgcggcttatacattc |
47918753 |
T |
|
| Q |
500 |
cattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtc |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47918754 |
cattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtc |
47918800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 6932520 - 6932600
Alignment:
| Q |
402 |
ttatgtataaactctttt---ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
479 |
Q |
| |
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|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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|
| T |
6932520 |
ttatgtataaactctttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
6932600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 29918965 - 29918750
Alignment:
| Q |
6 |
gatccttacaaaaacaaagtgaaaccagattttgtgaaggattgtagaaggctgaagcgcgagtatgatgagtttaaggtcaaaatcaatggttttcccg |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||| | |||||||||||| |||| |
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| T |
29918965 |
gatccttacaaaaacaaagtgaaacctgattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagttcaaggttagaatcaatggtttgcccg |
29918866 |
T |
|
| Q |
106 |
actctatccgtcgcaggtcagatgcttttcacgcaagtgaggaaaacaagaccatga---atcagagacaaaataggggagatgaacctgttgagcctat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
29918865 |
actctatccgtcgcaggtcagatgcttttcatgcaagagaggaaatcaaggccatgaaacatcagagacaaaataggggtgatgaacctgttgagcctat |
29918766 |
T |
|
| Q |
203 |
aaaggttcgaaaagca |
218 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
29918765 |
aaaggttcaaaaagca |
29918750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 215 - 537
Target Start/End: Complemental strand, 29918694 - 29918375
Alignment:
| Q |
215 |
agcactcaaagggtgaccattccggcataattcaggtactaatta---agcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcag |
311 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||| | |||| || |
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|
| T |
29918694 |
agcactcaaggggtgaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattataaaaaaattcagttag |
29918595 |
T |
|
| Q |
312 |
agtattagtaatataaatcaagattatannnnnnnctttccattttctcacgtttatttctgtccaattctatctgaagtgaaagagtttttatgtataa |
411 |
Q |
| |
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|| |||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||| ||||||||| || ||||||||||||| |
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| T |
29918594 |
agaattagtaatataaatcaagattcaaattat---tttccattttctcacacctatttatgtccaattctatgtgaagtgaa-gactttttatgtataa |
29918499 |
T |
|
| Q |
412 |
actcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgtcaaatgcggcttatacattccattgtggtcgc |
511 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||| || ||||||| |||||| |
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|
| T |
29918498 |
actctttt--attgccgatgtattcttttgttccagacttgttatctggtttaatccattgaatctgttaaatgcggcttatgcaatccattgcggtcgc |
29918401 |
T |
|
| Q |
512 |
agttgcaaagacatgaatattaaaac |
537 |
Q |
| |
|
|||||||||||||| ||||| ||||| |
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|
| T |
29918400 |
agttgcaaagacatcaatataaaaac |
29918375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 508582 - 508662
Alignment:
| Q |
402 |
ttatgtataaactctttt---ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
479 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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|
| T |
508582 |
ttatgtataaactctttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
508662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 477
Target Start/End: Original strand, 26291192 - 26291271
Alignment:
| Q |
402 |
ttatgtataaactctttt----ttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
477 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||| |
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|
| T |
26291192 |
ttatgtataaactcttttttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatct |
26291271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 477
Target Start/End: Original strand, 18290906 - 18290981
Alignment:
| Q |
403 |
tatgtataaactctttttta-ttgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
477 |
Q |
| |
|
||||||||||||| |||||| || || | ||||||||||||||| |||||||||||||||| ||| ||||||||| |
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|
| T |
18290906 |
tatgtataaactcctttttaattcccaatatattcttttgttccaaacttgttatattctttagtcaattgaatct |
18290981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 14610146 - 14610199
Alignment:
| Q |
32 |
agattttgtgaaggattgtagaaggctgaagcgcgagtatgatgagtttaaggt |
85 |
Q |
| |
|
|||||||||||||||| | |||||| ||||| | |||||||||||||| ||||| |
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|
| T |
14610146 |
agattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
14610199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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