View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_24 (Length: 557)
Name: NF3151_2D_low_24
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 45553763 - 45554304
Alignment:
| Q |
1 |
aaaaaccaccctttccctttcgtggtttccgtcttcctcatcattttctatttctctcacaaactcattcgctttctctctctnnnnnnnntccctaaaa |
100 |
Q |
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| T |
45553763 |
aaaaaccaccctttccctttcgtggtttccgtcttcctcatcattttctatttctctcacaaactcattcgctttctctctctaaaaaaaatccctaaaa |
45553862 |
T |
|
| Q |
101 |
ccagatctcactttctctctctagaattcaacgatggcggccgctcattctcctcgggaagagaacgtctacatggcaaagctcgccgaacaagccgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45553863 |
ccagatctcactttctctctctagaattcaacgatggcggccgctcattctcctcgggaagagaacgtctacatggcaaagctcgccgaacaagccgaac |
45553962 |
T |
|
| Q |
201 |
gctacgaagaaatggtggagttcatggaaaaagtctccgccaacgccgataacgaagaactcaccgttgaagagaggaaccttctctctgtagcctacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45553963 |
gctacgaagaaatggtggagttcatggaaaaagtctccgccaacgccgataacgaagaactcaccgttgaagagaggaaccttctctctgtagcctacaa |
45554062 |
T |
|
| Q |
301 |
gaatgtcatcggagcaagacgtgcttcgtggcgtatcatttcctcgatcgaacagaaagaggagagccgcggcaacgaggatcacgtctccgtcatccgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45554063 |
gaatgtcatcggagcaagacgtgcttcgtggcgtatcatttcctcgatcgaacagaaagaggagagccgcggcaacgaggatcatgtctccgtcatccgt |
45554162 |
T |
|
| Q |
401 |
gactaccgatctaagatcgaatcggagctttctaacatctgtgacggtattctcaagcttcttgattctcgtctcattccttccgctgcttccggtgatt |
500 |
Q |
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| T |
45554163 |
gactaccgatctaagatcgaatcagagctttctaacatctgtgacggtattctcaagcttcttgattctcgtctcattccttccgctgcttccggtgatt |
45554262 |
T |
|
| Q |
501 |
ccaaggttttctaccttaagatgaagggagactatcacaggt |
542 |
Q |
| |
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| T |
45554263 |
ccaaggttttctaccttaagatgaagggagactatcacaggt |
45554304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 166 - 542
Target Start/End: Original strand, 27125087 - 27125463
Alignment:
| Q |
166 |
cgtctacatggcaaagctcgccgaacaagccgaacgctacgaagaaatggtggagttcatggaaaaagtctccgccaacgccgataacgaagaactcacc |
265 |
Q |
| |
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|||||||||||| || |||||||||||||||||||| |||||||| ||||| || |||||||||||||| |||| || ||| | ||||||||||||| |
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| T |
27125087 |
cgtctacatggcgaaactcgccgaacaagccgaacgttacgaagagatggtcgatttcatggaaaaagtaaccgcagccgtcgaaagcgaagaactcacc |
27125186 |
T |
|
| Q |
266 |
gttgaagagaggaaccttctctctgtagcctacaagaatgtcatcggagcaagacgtgcttcgtggcgtatcatttcctcgatcgaacagaaagaggaga |
365 |
Q |
| |
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|| ||||| | ||||||||||| || |||||||| || |||||||||||| |||||||||||||||||||||| || || || |||||||| || || | |
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| T |
27125187 |
gtcgaagaacgtaaccttctctccgtcgcctacaaaaacgtcatcggagcacgacgtgcttcgtggcgtatcatctcttccattgaacagaaggaagaaa |
27125286 |
T |
|
| Q |
366 |
gccgcggcaacgaggatcacgtctccgtcatccgtgactaccgatctaagatcgaatcggagctttctaacatctgtgacggtattctcaagcttcttga |
465 |
Q |
| |
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|||| || ||||| || || || |||| || ||||| ||| |||||||||||||| | || ||||| || |||||| |||||||||| ||||||||||| |
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| T |
27125287 |
gccgtggtaacgatgaacatgttaccgtgattcgtgattacagatctaagatcgaagctgaactttccaatatctgtaacggtattcttaagcttcttga |
27125386 |
T |
|
| Q |
466 |
ttctcgtctcattccttccgctgcttccggtgattccaaggttttctaccttaagatgaagggagactatcacaggt |
542 |
Q |
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|||||| | |||||||| |||||||| |||||||| ||||||||||||||||||||||| || || ||||| |||| |
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| T |
27125387 |
ttctcgcttgattccttctgctgcttctggtgattctaaggttttctaccttaagatgaaaggtgattatcataggt |
27125463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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