View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_low_26 (Length: 519)
Name: NF3151_2D_low_26
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 26685879 - 26686370
Alignment:
| Q |
1 |
agcacaatactttcattgcaaatactgtgtataaaaaattactagcactgctaacgagagnnnnnnn-tcagttcactgaatgtgagatctttaaatcgt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26685879 |
agcacaatactttcattgcaaatactgtgtataaaagattactagcactgctaacaagagaaaaaaaatcagttcactgaatgtgagatctttaaatcgt |
26685978 |
T |
|
| Q |
100 |
ggaaaattactagcaactttgctatcaagttgcagaatatcgtggaaaattattgtccttctttgaatcgataggagtcatcatgttggatttaaccggc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26685979 |
ggaaaattactagcaactttgctatcaagttgcagaatatcgtggaaaattattgtccttctttgaatcgataggagtcatcatgttggatttaaccggc |
26686078 |
T |
|
| Q |
200 |
tagaaagccaatcaaatgctgacacatggacaaagagtcatttgcatcaagacacgttgtgcataataactctggtgcacaccacccccattgaagcatg |
299 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26686079 |
tagaaagccaatccaacgctgacacatggacaaagagtcatttgcatcaagacacgttgtgcataataactctggtgcacaccacccccattgaagcatg |
26686178 |
T |
|
| Q |
300 |
ccccatgcattctataccgtacacgtggcctccaacgactttctgaaggcgccatatttcatttgttagtgtcttcttcctctatataatggtgattcag |
399 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26686179 |
ccccatgcattctatactgt---------ctccaacgactttctgaaggcgtcatatttcatctgttagtgtcttcttcctctatataagggtgattcag |
26686269 |
T |
|
| Q |
400 |
cgtaacccattcattttccacatttttatacattcaatctcatttcttacaccgcgaagacgtcatcgccaccgcatcggagcactgcaccgttaccgtt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26686270 |
cgtaacccattcattttccacatttttatacattcaatctcatttcttacaccgcgaagacgtcatcgccaccgcatcggagcactgcaccgttaccgtt |
26686369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University