View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_low_28 (Length: 464)
Name: NF3151_2D_low_28
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_28 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 50567038 - 50566575
Alignment:
| Q |
1 |
cacttcaatgagcaattgcaacaaaagagcataccatcttcccagaagaatagacaagtgcagttgcttttggttttctgatcttcataatgagaaaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50567038 |
cacttcaatgagcaattgcaacaaaagagcacaccatcttcccagaagaatagataagtgcagttgcttttggttttctgatcttcataatgagaaaagg |
50566939 |
T |
|
| Q |
101 |
gaaatgctacaaagaattttgcatcacaaacatcgatcagtgccactaaagcaagcatatttatcaatgcaaaggaaaaagtaagcacgcgcatgcaaca |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50566938 |
gaaatgctgcaaagaattttgcatcacaaacatcgatcagtgccactaaagcaagcatatttatcaatgcaaaggaaaaagtaagcacgcgcatgcaaca |
50566839 |
T |
|
| Q |
201 |
caaagacttgcatacataacacagatggtatttgaatgagattcacaatgaatgagcagatgaaacttgccttgggtttgtacactgcactacgagattg |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50566838 |
cacagacttgcatacataacacagatggtatttgaatgagattcacaatgaatgagcagatgaaacttgccttgggtttgtacactgcgctacgagattg |
50566739 |
T |
|
| Q |
301 |
gagtgcaattgcttcgagatccaacttacacatccaattcactgttgaaacaagatttctgcaagtaaaaataaactcctcagacaatatttagtcttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50566738 |
gagtgcaattgcttcgagatccaacttacacatccaattcactgttgaaacaagatttctgcaagtaaaaataaacacctcagacaatatttagtcttta |
50566639 |
T |
|
| Q |
401 |
gnnnnnnnnnnnnnnnnnnnatgagtaaatagtttattctaaagagaaggaaatttattatata |
464 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50566638 |
gatatatatctatatatataatgagtaaatagtttattctaaagagaacgaaatttattatata |
50566575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 50572878 - 50572504
Alignment:
| Q |
1 |
cacttcaatgagcaattgcaacaaaagagcataccatcttcccagaagaatagacaagtgcagttgcttttggttttctgatcttcataatgagaaaagg |
100 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| | ||||||| | ||| ||||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
50572878 |
cacttcaatgagcaagtgcaaccaaagagcataccatcatgccagaagcagagataagtgcagttgtttttggttctctgatcttcataacgagaaaagg |
50572779 |
T |
|
| Q |
101 |
gaaatgctacaaagaattttgcatcacaaacatcgatcagtgccactaaagcaagcatatttatcaatgcaaaggaaaaagtaagcacgcgcatgcaaca |
200 |
Q |
| |
|
| | ||||||||||||||||||| || | | ||||||||| ||||| ||| |||||||| |||| ||||| ||||| |||||| || |||| |
|
|
| T |
50572778 |
tatacgctacaaagaattttgcattacgatc----atcagtgcctctaaaacaatcatatttaccaattgaaagg-aaaagcaagcacaagcgcacaacg |
50572684 |
T |
|
| Q |
201 |
caaagacttgcatacataacacagatggtatttgaatgagattcacaatgaatgagcagatgaaacttgccttgggtttgtacactgcactac------- |
293 |
Q |
| |
|
|| | |||||||||||||||||| || ||||||| |||| |||||||| || |||||||||||||||||||||||| |||||| || ||| |
|
|
| T |
50572683 |
cacacacttgcatacataacacatatagtatttggatgacattcacaacgattgagcagatgaaacttgccttgggcttgtacgtcacaatacgagtgtt |
50572584 |
T |
|
| Q |
294 |
--gagattggagtgcaattgcttcgagatccaacttacacatccaattcactgttgaaacaagatttctgcaagtaaaaa |
371 |
Q |
| |
|
||| |||||| |||| |||| |||||| ||||||| | |||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
50572583 |
aggagcttggagaccaatcgctttgagatctaacttacgcccccaatttactgttgaaacaatatttctgcaagtaaaaa |
50572504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 369
Target Start/End: Original strand, 9987490 - 9987602
Alignment:
| Q |
257 |
cagatgaaacttgccttgggtttgtacactgcactacgagattggagtgcaattgcttcgagatccaacttacacatccaattcactgttgaaacaagat |
356 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||| |||||||||||| | |||| ||||||||||||| || |
|
|
| T |
9987490 |
cagatgaaacttgccttgggattgtactctgcattacgagcttggagtgcaattgctttgagatccaacttggtgtccaaattgactgttgaaacaatat |
9987589 |
T |
|
| Q |
357 |
ttctgcaagtaaa |
369 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
9987590 |
ttctggaagtaaa |
9987602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University