View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_low_29 (Length: 444)
Name: NF3151_2D_low_29
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 2 - 427
Target Start/End: Original strand, 38220107 - 38220530
Alignment:
| Q |
2 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220107 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
38220206 |
T |
|
| Q |
102 |
acaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaattt |
201 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220207 |
acaaagaaa-tccatattgctttactatataatacccaacattggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaattt |
38220305 |
T |
|
| Q |
202 |
ggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaagctaggtattttggatgt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
38220306 |
ggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaatctaggtattttggattt |
38220405 |
T |
|
| Q |
302 |
taatnnnnnnnnnnnnnnntcaaaatttgtatattttgtgaaccgactgatcttgatctaacttttattgtgcatcgactgcgtgtttcttgatgaattt |
401 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220406 |
taat-aaaaaaaaaaaaaatcaaaatttgtatattttgtgaactgactgatcttgatctaacatttattgtgcatcgactgcgtgtttcttgatgaattt |
38220504 |
T |
|
| Q |
402 |
gtttacctttcaatcatgttctgagt |
427 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
38220505 |
gtttaccttgcaatcatgttctgagt |
38220530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 2 - 419
Target Start/End: Original strand, 38242962 - 38243370
Alignment:
| Q |
2 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |||||| |||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
38242962 |
ccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgatactcaatctgaa |
38243061 |
T |
|
| Q |
102 |
acaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaattt |
201 |
Q |
| |
|
|||| ||| ||||| ||||| | ||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
38243062 |
acaaagaaa-tccatgttgct---cactatgatacccaacaatgggctagtgttacatttaagagttaaatcgagattgagacaaataaattactaattt |
38243157 |
T |
|
| Q |
202 |
ggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttc-aagatcggacggtcctagatttcaagctaggtattttggatg |
300 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||| || |||||||||| | |||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
38243158 |
ggattcctagcagccgagagactctacattcacgcaatcagcacagactgttggaccaaagatcagaaggtcctagatttcaagctcggtattttggatt |
38243257 |
T |
|
| Q |
301 |
ttaatnnnnnnnnnnnnnnntcaaaatttgtatattttgtgaaccgactgatcttgatctaacttttattg-tgcatcgactgcgtgtttcttgatgaat |
399 |
Q |
| |
|
||||| |||| ||| ||||||||||||||| ||||| |||||||| ||| || |||| ||||| ||||| |||||||||||||||| |
|
|
| T |
38243258 |
ttaat-------caaaataatcaatattcgtatattttgtgaactgactggtcttgatccaacattcattgatgcattgactgtgtgtttcttgatgaat |
38243350 |
T |
|
| Q |
400 |
ttgtttacctttcaatcatg |
419 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
38243351 |
tcatttaccttgcaatcatg |
38243370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38237986 - 38238090
Alignment:
| Q |
1 |
gccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||| |||| |||||||||||||||||| |||| |
|
|
| T |
38237986 |
gccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgatactcattctga |
38238085 |
T |
|
| Q |
101 |
aacaa |
105 |
Q |
| |
|
||||| |
|
|
| T |
38238086 |
aacaa |
38238090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38214068 - 38214187
Alignment:
| Q |
1 |
gccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctga |
100 |
Q |
| |
|
|||||||||||| | |||||||||| ||||| ||||||||||||||||||||| ||||| | |||||| || |||||||||||||||||||||||| |
|
|
| T |
38214068 |
gccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaacctga |
38214167 |
T |
|
| Q |
101 |
aacaattaaaatccatattgct |
122 |
Q |
| |
|
||||| ||||||||| ||||| |
|
|
| T |
38214168 |
aacaa--aaaatccatgttgct |
38214187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 38226447 - 38226556
Alignment:
| Q |
1 |
gccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctga |
100 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||| |||||||||||||| || ||||||| |||| ||| |||||||||||||||||| |||| |
|
|
| T |
38226447 |
gccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctga |
38226546 |
T |
|
| Q |
101 |
aacaattaaa |
110 |
Q |
| |
|
||||| |||| |
|
|
| T |
38226547 |
aacaaataaa |
38226556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 38248176 - 38248264
Alignment:
| Q |
16 |
tgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
105 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||||| |||| || | |||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
38248176 |
tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaa |
38248264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38253314 - 38253418
Alignment:
| Q |
1 |
gccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctga |
100 |
Q |
| |
|
|||||| ||||| | |||||||||| |||| || ||||||||||| |||||||| ||||| || | | || |||| |||| ||||| ||||||||||||| |
|
|
| T |
38253314 |
gccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcatactcaacctga |
38253413 |
T |
|
| Q |
101 |
aacaa |
105 |
Q |
| |
|
||||| |
|
|
| T |
38253414 |
aacaa |
38253418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 17454543 - 17454647
Alignment:
| Q |
1 |
gccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctga |
100 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||| ||||| |||| |||| ||||||||||||||||||| |||| |
|
|
| T |
17454543 |
gccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttgatactcaatctga |
17454642 |
T |
|
| Q |
101 |
aacaa |
105 |
Q |
| |
|
||||| |
|
|
| T |
17454643 |
aacaa |
17454647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 17433465 - 17433568
Alignment:
| Q |
2 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
101 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||||||||| | |||| ||||| | || |||| ||||||||||||||||||| ||||| |
|
|
| T |
17433465 |
ccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttgatactcaatctgaa |
17433564 |
T |
|
| Q |
102 |
acaa |
105 |
Q |
| |
|
|||| |
|
|
| T |
17433565 |
acaa |
17433568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University