View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_2D_low_30 (Length: 430)

Name: NF3151_2D_low_30
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_2D_low_30
NF3151_2D_low_30
[»] chr1 (2 HSPs)
chr1 (189-425)||(33987368-33987604)
chr1 (19-189)||(33987123-33987293)
[»] chr2 (15 HSPs)
chr2 (189-407)||(8974165-8974383)
chr2 (261-429)||(9020231-9020400)
chr2 (308-429)||(8995828-8995950)
chr2 (308-425)||(8987895-8988013)
chr2 (190-269)||(8987815-8987894)
chr2 (190-269)||(8995748-8995827)
chr2 (307-425)||(9026206-9026325)
chr2 (110-189)||(8991782-8991861)
chr2 (110-189)||(9020042-9020121)
chr2 (110-192)||(8995614-8995696)
chr2 (338-379)||(9014897-9014938)
chr2 (217-268)||(9026154-9026205)
chr2 (110-167)||(8984463-8984520)
chr2 (110-157)||(8973987-8974034)
chr2 (145-189)||(8972980-8973024)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 189 - 425
Target Start/End: Original strand, 33987368 - 33987604
Alignment:
Q  189 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 288  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987368 agtttataaactaaaaagtaaatgcaacaatgcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 33987467  T
Q  289 ctcagccacaaaataaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 388  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987468 ctcagccaccaaaaaaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 33987567  T
Q  389 aattgatcaaccaaaactgtagaagttttaatttgcc 425  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  33987568 aattgatcaaccaaaactgtataagttttaaattgcc 33987604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 33987123 - 33987293
Alignment:
Q  19 acatccttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987123 acatccttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaat 33987222  T
Q  119 gtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33987223 gtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgctatga 33987293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 189 - 407
Target Start/End: Original strand, 8974165 - 8974383
Alignment:
Q  189 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 288  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8974165 agttcataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagctatttctattttgaccctttagcagaattttgatctctgaggaggg 8974264  T
Q  289 ctcagccacaaaataaatcacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttg 387  Q
      || || | ||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  8974265 accaacctccaaa-aaaacacaagaaataaattgcttaacctgcaacaaaggcataaactattttgcagaaacttcatttttcaaataaattcttgtttg 8974363  T
Q  388 aaattgatcaaccaaaactg 407  Q
    ||||||||||||||||||||    
T  8974364 aaattgatcaaccaaaactg 8974383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 261 - 429
Target Start/End: Original strand, 9020231 - 9020400
Alignment:
Q  261 ttagcagaattttgatctctgaggagggctcagccacaaaataaat-cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaa 358  Q
    ||||||| |||||||||||||||| ||| ||||||| |||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9020231 ttagcagtattttgatctctgaggggggatcagccataaaaaaaaaacacaagaaataaattgcttaacctgcaacaaaggcataaattattttgcagaa 9020330  T
Q  359 acttgatttttcaaataaattcctgtttgaaattgatcaaccaaaactgtagaagttttaatttgccaaaa 429  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||    
T  9020331 actttatttttcaaataaattcctgtttgaaattgattaaccaaaactgtatatg-tttaatttgccaaaa 9020400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 8995828 - 8995950
Alignment:
Q  308 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 406  Q
    ||||||||||||||| ||||||||||||||   |||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  8995828 acaagaaataaattgcttaacctgcaacaataacataaattattttgtagaaactctatttttcaaataaattcctatttgaaattgatcaaccaaaact 8995927  T
Q  407 gtagaagttttaatttgccaaaa 429  Q
    ||| |||||||||||||||||||    
T  8995928 gtataagttttaatttgccaaaa 8995950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 308 - 425
Target Start/End: Original strand, 8987895 - 8988013
Alignment:
Q  308 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 406  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||  ||||||||||||| ||||| |||||||||||||||||||||||    
T  8987895 acaagaaataaattgcttaacctgcaacaatgacataaattattttgtagaaactctatttttcaaataagttcctatttgaaattgatcaaccaaaact 8987994  T
Q  407 gtagaagttttaatttgcc 425  Q
    ||  |||||||||||||||    
T  8987995 gtgtaagttttaatttgcc 8988013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 8987815 - 8987894
Alignment:
Q  190 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8987815 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8987894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 8995748 - 8995827
Alignment:
Q  190 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8995748 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8995827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 425
Target Start/End: Original strand, 9026206 - 9026325
Alignment:
Q  307 cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaac 405  Q
    |||||||||||||||| ||  |||||||||| | |||||||||||||| |||||||  |||||||||||||||  || |||||||||||| |||||||||    
T  9026206 cacaagaaataaattgcttctcctgcaacaatgacataaattattttgtagaaactctatttttcaaataaatatctatttgaaattgattaaccaaaac 9026305  T
Q  406 tgtagaagttttaatttgcc 425  Q
    |||| |||| ||||||||||    
T  9026306 tgtataagtcttaatttgcc 9026325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 8991782 - 8991861
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||| | ||||| ||||||||||||    
T  8991782 ttttctaatgtctgcatataatgctgcagacttgacttgattgtttctagaaatggtgccagtgcagtgacttgttatga 8991861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 9020042 - 9020121
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||| |||||  |||| ||||||    
T  9020042 ttttctaatgtctgcatatgatgctgcatacttgacttgattgtttctagaagtgctgcaaatgcagtcactttttatga 9020121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 8995614 - 8995696
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatgagtt 192  Q
    ||||||||| || | | |||||||||||||||||||||||| ||||||||||  ||| ||||||||| |||||||||||||||    
T  8995614 ttttctaatttcagtatatgatgctgcagacttgacttgattgtttctagaaacggtccaactgcagtgacttgttatgagtt 8995696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 9014897 - 9014938
Alignment:
Q  338 ggcataaattattttgcagaaacttgatttttcaaataaatt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9014897 ggcataaattattttgcagaaacttgatttttcaaataaatt 9014938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 9026154 - 9026205
Alignment:
Q  217 aattcagctaaattaagttgaatagccatttctatttcgaccctttagcaga 268  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  9026154 aattcagctaaatttagttgaacaaccatttctatttcgaccctttagcaga 9026205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 8984463 - 8984520
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtg 167  Q
    ||||||||||||| || ||||||||||| ||| |||||||| ||||||||||||||||    
T  8984463 ttttctaatgtcttcatatgatgctgcaaactagacttgattgtttctagaagtggtg 8984520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 8973987 - 8974034
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttct 157  Q
    |||||||||||||| | ||||||||||||||||||||| || ||||||    
T  8973987 ttttctaatgtctgtatatgatgctgcagacttgacttcattgtttct 8974034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 8972980 - 8973024
Alignment:
Q  145 cttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||    
T  8972980 cttgattgtttctagaaatggtgcaagtgcagtgacttgttatga 8973024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University