View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_2D_low_31 (Length: 430)

Name: NF3151_2D_low_31
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_2D_low_31
NF3151_2D_low_31
[»] chr1 (2 HSPs)
chr1 (189-425)||(33987368-33987604)
chr1 (19-189)||(33987123-33987293)
[»] chr2 (15 HSPs)
chr2 (189-407)||(8974165-8974383)
chr2 (261-429)||(9020231-9020400)
chr2 (308-429)||(8995828-8995950)
chr2 (308-425)||(8987895-8988013)
chr2 (190-269)||(8987815-8987894)
chr2 (190-269)||(8995748-8995827)
chr2 (307-425)||(9026206-9026325)
chr2 (110-189)||(8991782-8991861)
chr2 (110-189)||(9020042-9020121)
chr2 (110-192)||(8995614-8995696)
chr2 (338-379)||(9014897-9014938)
chr2 (217-268)||(9026154-9026205)
chr2 (110-167)||(8984463-8984520)
chr2 (110-157)||(8973987-8974034)
chr2 (145-189)||(8972980-8973024)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 189 - 425
Target Start/End: Original strand, 33987368 - 33987604
Alignment:
Q  189 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 288  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987368 agtttataaactaaaaagtaaatgcaacaatgcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 33987467  T
Q  289 ctcagccacaaaataaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 388  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987468 ctcagccaccaaaaaaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 33987567  T
Q  389 aattgatcaaccaaaactgtagaagttttaatttgcc 425  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  33987568 aattgatcaaccaaaactgtataagttttaaattgcc 33987604  T

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Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 33987123 - 33987293
Alignment:
Q  19 acatccttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987123 acatccttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaat 33987222  T
Q  119 gtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33987223 gtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgctatga 33987293  T

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Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 189 - 407
Target Start/End: Original strand, 8974165 - 8974383
Alignment:
Q  189 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 288  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8974165 agttcataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagctatttctattttgaccctttagcagaattttgatctctgaggaggg 8974264  T
Q  289 ctcagccacaaaataaatcacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttg 387  Q
      || || | ||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  8974265 accaacctccaaa-aaaacacaagaaataaattgcttaacctgcaacaaaggcataaactattttgcagaaacttcatttttcaaataaattcttgtttg 8974363  T
Q  388 aaattgatcaaccaaaactg 407  Q
    ||||||||||||||||||||    
T  8974364 aaattgatcaaccaaaactg 8974383  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 261 - 429
Target Start/End: Original strand, 9020231 - 9020400
Alignment:
Q  261 ttagcagaattttgatctctgaggagggctcagccacaaaataaat-cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaa 358  Q
    ||||||| |||||||||||||||| ||| ||||||| |||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9020231 ttagcagtattttgatctctgaggggggatcagccataaaaaaaaaacacaagaaataaattgcttaacctgcaacaaaggcataaattattttgcagaa 9020330  T
Q  359 acttgatttttcaaataaattcctgtttgaaattgatcaaccaaaactgtagaagttttaatttgccaaaa 429  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||    
T  9020331 actttatttttcaaataaattcctgtttgaaattgattaaccaaaactgtatatg-tttaatttgccaaaa 9020400  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 8995828 - 8995950
Alignment:
Q  308 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 406  Q
    ||||||||||||||| ||||||||||||||   |||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  8995828 acaagaaataaattgcttaacctgcaacaataacataaattattttgtagaaactctatttttcaaataaattcctatttgaaattgatcaaccaaaact 8995927  T
Q  407 gtagaagttttaatttgccaaaa 429  Q
    ||| |||||||||||||||||||    
T  8995928 gtataagttttaatttgccaaaa 8995950  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 308 - 425
Target Start/End: Original strand, 8987895 - 8988013
Alignment:
Q  308 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaact 406  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||  ||||||||||||| ||||| |||||||||||||||||||||||    
T  8987895 acaagaaataaattgcttaacctgcaacaatgacataaattattttgtagaaactctatttttcaaataagttcctatttgaaattgatcaaccaaaact 8987994  T
Q  407 gtagaagttttaatttgcc 425  Q
    ||  |||||||||||||||    
T  8987995 gtgtaagttttaatttgcc 8988013  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 8987815 - 8987894
Alignment:
Q  190 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8987815 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8987894  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 8995748 - 8995827
Alignment:
Q  190 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8995748 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8995827  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 425
Target Start/End: Original strand, 9026206 - 9026325
Alignment:
Q  307 cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcaaccaaaac 405  Q
    |||||||||||||||| ||  |||||||||| | |||||||||||||| |||||||  |||||||||||||||  || |||||||||||| |||||||||    
T  9026206 cacaagaaataaattgcttctcctgcaacaatgacataaattattttgtagaaactctatttttcaaataaatatctatttgaaattgattaaccaaaac 9026305  T
Q  406 tgtagaagttttaatttgcc 425  Q
    |||| |||| ||||||||||    
T  9026306 tgtataagtcttaatttgcc 9026325  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 8991782 - 8991861
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||| | ||||| ||||||||||||    
T  8991782 ttttctaatgtctgcatataatgctgcagacttgacttgattgtttctagaaatggtgccagtgcagtgacttgttatga 8991861  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 9020042 - 9020121
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||| |||||  |||| ||||||    
T  9020042 ttttctaatgtctgcatatgatgctgcatacttgacttgattgtttctagaagtgctgcaaatgcagtcactttttatga 9020121  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 8995614 - 8995696
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatgagtt 192  Q
    ||||||||| || | | |||||||||||||||||||||||| ||||||||||  ||| ||||||||| |||||||||||||||    
T  8995614 ttttctaatttcagtatatgatgctgcagacttgacttgattgtttctagaaacggtccaactgcagtgacttgttatgagtt 8995696  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 9014897 - 9014938
Alignment:
Q  338 ggcataaattattttgcagaaacttgatttttcaaataaatt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9014897 ggcataaattattttgcagaaacttgatttttcaaataaatt 9014938  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 9026154 - 9026205
Alignment:
Q  217 aattcagctaaattaagttgaatagccatttctatttcgaccctttagcaga 268  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  9026154 aattcagctaaatttagttgaacaaccatttctatttcgaccctttagcaga 9026205  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 8984463 - 8984520
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtg 167  Q
    ||||||||||||| || ||||||||||| ||| |||||||| ||||||||||||||||    
T  8984463 ttttctaatgtcttcatatgatgctgcaaactagacttgattgtttctagaagtggtg 8984520  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 8973987 - 8974034
Alignment:
Q  110 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttct 157  Q
    |||||||||||||| | ||||||||||||||||||||| || ||||||    
T  8973987 ttttctaatgtctgtatatgatgctgcagacttgacttcattgtttct 8974034  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 8972980 - 8973024
Alignment:
Q  145 cttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 189  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||    
T  8972980 cttgattgtttctagaaatggtgcaagtgcagtgacttgttatga 8973024  T

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