View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_34 (Length: 418)
Name: NF3151_2D_low_34
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 183 - 397
Target Start/End: Original strand, 13909279 - 13909493
Alignment:
| Q |
183 |
atgatttttcatccttaaattaaataaattgaaaacttcttgacctaactgtagtgaaccactatcggtgcgacgtcatgtggtaagaacaaccaaagtg |
282 |
Q |
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| T |
13909279 |
atgatttttcatccctaaattaaataaattgaaaacttcttgacctaactgtagtgaaccactatcggtgcgacatcatgtggtaagaacaacaaaagtg |
13909378 |
T |
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| Q |
283 |
aagaatccatgcatttgttcacttgctagacaaagcacaagtttttatctttcattactagaatcgtcggtttgaaccacatttgcataattggatgagc |
382 |
Q |
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| T |
13909379 |
aagaatccatgcatttgttcacttgctagacaaagcataagtttttatctttcattactagaatcgtcggtttgaaccacatttgcataattggatgagc |
13909478 |
T |
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| Q |
383 |
tcaattttgtttgga |
397 |
Q |
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| T |
13909479 |
tcaattttgtttgga |
13909493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 13908975 - 13909081
Alignment:
| Q |
94 |
tttcctaatcatggaatatatctaacatcattcatc----acatgccaccattgtttatagtagtttaatttccctcattttggtgatagaacatgattt |
189 |
Q |
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| T |
13908975 |
tttcctaaccatggaatatatctaacatcattcatcgctcacataccaccattgtttatagtagtttaatttccctcattttggtgatagaacatgattt |
13909074 |
T |
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| Q |
190 |
ttcatcc |
196 |
Q |
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| T |
13909075 |
ttcatcc |
13909081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 170560 - 170619
Alignment:
| Q |
232 |
tgtagtgaaccactatcggtgcgacgtcatgtggtaagaacaaccaaagtgaagaatcca |
291 |
Q |
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| T |
170560 |
tgtagtgaaccacttccagtgcggcgtcatgtggtaagaacaaccaaagtcaagaatcca |
170619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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