View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_low_38 (Length: 400)
Name: NF3151_2D_low_38
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 30288118 - 30287745
Alignment:
| Q |
10 |
atagtatattgcatattttttatgtgttttatctgctggaacttatattttccatgcttcttactgatctgttagatgtttcctttacttgactcttacg |
109 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30288118 |
atagtatatagcatattttaaatgtgtcttatctgctggaacttatattttgcatgcttcttactgatctgttagatgtttcctttacttgactcttacg |
30288019 |
T |
|
| Q |
110 |
caggaaatcaaaggagacaacacagtgaagagaagcaggaaaaggaagaggtcgcggaaaggacaaaaatcaacagaaacagagagttaagtaggctatt |
209 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30288018 |
caggaaaccaaaggagacaacacagtgaagagaagcaggaaaaggaagaggtcgcggaaaggacaaaaatcaacagaaacagagagttaagtaggtcatt |
30287919 |
T |
|
| Q |
210 |
agttatattgattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcatggcgcgggaaagtacactatttgtattttgtaatt |
309 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
30287918 |
agttatatggattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcatggcacgggaaagtacactagttgtattttgtaatt |
30287819 |
T |
|
| Q |
310 |
ttatcatactatgtttctatgtggccattattgatttttatcaaagttataggtaatattgagtctcatcaatg |
383 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
30287818 |
ttatcatactatgtttctatttggccattattgatttttatcaaagttatcggtaatgttgagtatcatcaatg |
30287745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 41705872 - 41706195
Alignment:
| Q |
10 |
atagtatattgcatattttttatgtgttttatctgctggaacttatattttccatgcttcttactgatctgttagatgtttcctttacttgactcttacg |
109 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
41705872 |
atagtatatagcatattttaaatgtgttttatctgctggaagttatattttgcaagcttcttactgatctgttagatgtttccttgacttgactcttatg |
41705971 |
T |
|
| Q |
110 |
caggaaatcaaaggagacaacacagtgaagagaagcaggaaaaggaagaggtcgcggaaaggacaaaaatcaacagaaacagagagttaagtaggctatt |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||| || |
|
|
| T |
41705972 |
taggaaaccaaaggagacaacacagtgaagagaagcaggaaaaggaagaggtcacagaaaggaaaaaaatcaacagaaacagacagttaagtaggtcgtt |
41706071 |
T |
|
| Q |
210 |
agttat-attgattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcatggcgcgggaaagtacactatttgtattttgtaat |
308 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
41706072 |
aggtataatggattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcat-----gggaaagtacgctagttgtattttgtaat |
41706166 |
T |
|
| Q |
309 |
tttatcatactatgtttctatgtggccat |
337 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |
|
|
| T |
41706167 |
tttatcatactatgtttttatttggccat |
41706195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University