View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_42 (Length: 352)
Name: NF3151_2D_low_42
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 79 - 337
Target Start/End: Original strand, 34584217 - 34584488
Alignment:
| Q |
79 |
aggtatgtttttatgggtgaagcttatccatctagtgattgaattggaaatcggatttaattatat--------------cgtagttttctcaaacttta |
164 |
Q |
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| T |
34584217 |
aggtatgtttttatgggtgaagcttatccatctagtgattgtattggaaatcggatttaattctattatctcatcttgatcgtagttttctcaaacttta |
34584316 |
T |
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| Q |
165 |
tatatttattagctatgtaatagctctttcnnnnnnnnaattttcaaatgacttctttactttgatgcataaagaaggttgcataaagagaagaagagaa |
264 |
Q |
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| T |
34584317 |
tatttattatagctatgtaatagctttttcttttttt-aattttcaaatgacttctttactttgatgcataaagaaggttgcataaagagaagaagagaa |
34584415 |
T |
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| Q |
265 |
aaataagtaaataatgtgcagagaaaggaaatacacagtaagaaatagaagtggaaaaattagcagatgatgt |
337 |
Q |
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| T |
34584416 |
aaataagtaaataatgtgcagagaaaggaaatacacagtaagaaatagaagaggaaaaattagcagatgatgt |
34584488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34584115 - 34584195
Alignment:
| Q |
1 |
acatttgcagtatgatgctgagctacttttttaaataaaggccaagataacatcaaaatattgaatacaaagaaaatgagg |
81 |
Q |
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| T |
34584115 |
acatttgcagtatgatgctgagctacttttttaaataaaggccaagataacatcaaaatattgaatacaaagaaaatgagg |
34584195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 34578464 - 34578551
Alignment:
| Q |
50 |
acatcaaaatattgaatacaaagaaaatgaggtatgtttttatgggtgaagcttatccatctagtgattgaattggaaatcggatttaatt |
140 |
Q |
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| T |
34578464 |
acatgaaaatattgaatagaaagaaaatgagg---agttttatgggtgaagcttatccatctagtgattgaattgcaaatcggatttaatt |
34578551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 34578661 - 34578715
Alignment:
| Q |
251 |
agagaagaagagaaaaataagtaaataatgtgcagagaaaggaaatacacagtaa |
305 |
Q |
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| T |
34578661 |
agagaagaagagaaaaataagtaaataatttgcagagaaaggaaaaacatagtaa |
34578715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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