View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_43 (Length: 350)
Name: NF3151_2D_low_43
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 10178504 - 10178668
Alignment:
| Q |
168 |
ccacatttggaccctcaaaaccaattactactataaagcacttttcttttaataatgtgaccaaatccaaagtgaatatatgtacttttcttttaatgaa |
267 |
Q |
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| T |
10178504 |
ccacatttggaccctcaaaaccaattactactataaagcccttttcttttaataatgtgaccaaatccaa-gtgaatatatgtacttttcttttaatgaa |
10178602 |
T |
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| Q |
268 |
gctatacagtagtttgagtcgatgccagaggcggagaagcatcatgtttcatggaatgcatggttt |
333 |
Q |
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| T |
10178603 |
gctatacagtagtttgagtcgatgccagaggcggagaagcatcatgtttcatggaatgcatggttt |
10178668 |
T |
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Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 10178335 - 10178461
Alignment:
| Q |
1 |
tcctttttcaacattgaatcaaaccaaaagaaatcagatacatatattttaagtttgcttgtacttttgttccccacattttaccactcttgcgaaaagg |
100 |
Q |
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| T |
10178335 |
tcctttttcaaaattgaatcaaaccaaaagaaatcggatacatatattttaagtttgattgtacttttgttccccacattttaccactcttgcgaaaagg |
10178434 |
T |
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| Q |
101 |
gtccattcatttcaaaatcaaacatgg |
127 |
Q |
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| T |
10178435 |
gtccattcatttcaaaatcaaacatgg |
10178461 |
T |
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