View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_46 (Length: 341)
Name: NF3151_2D_low_46
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_46 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 43628602 - 43628273
Alignment:
| Q |
16 |
gacatcatgttggatgaaaatacttttatcatttttctcaatgatattttccaatatttagtagacattacctagtaagttttaatagagatttatatat |
115 |
Q |
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| T |
43628602 |
gacatcatgttggatgaaaatacttt-atcatttttctcaatgatattttccaatatttagtagactatacctagtaagtttttatagagatttatatat |
43628504 |
T |
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| Q |
116 |
ttaatgtatcggaaaatgaagtatatgnnnnnnn-aatgctcttactaatttaaaattcttaataaaactattaagaaattcgttaagaagatccaaaat |
214 |
Q |
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| T |
43628503 |
ttaatgtatcggaaaatgaagtatatgttatttttaatactcttactaatttaaaattcttaataaaactattaagaaattcgttaagaagatccaaaat |
43628404 |
T |
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| Q |
215 |
attatcgctaaccggacgatattatggaatgatggctgttaattaaaagttaggaaatcaatacggaaatgatggttgga----aaggctaaattaatcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43628403 |
attatcgctaaccggacgatattatggaatgatggctgttaattaaaagttcggaaatcaatacggaaatgatggttggaaattaaggctaaattaatcc |
43628304 |
T |
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| Q |
311 |
tcacaaaattgatgtgattagtgataacact |
341 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43628303 |
tcacaaaattgatgtgattagtgataacact |
43628273 |
T |
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