View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_47 (Length: 338)
Name: NF3151_2D_low_47
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 42474292 - 42474550
Alignment:
| Q |
1 |
tgacactaatggaatggaaagaagtgagaacactagatggagtgacacattttgctggttttttgtcatctcattctaggacttacgtcactggaataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474292 |
tgacactaatggaatggaaagaagtgagaacactagatggagtgacactttttgctggttttttgtcatctcattctaggacttacgtcactggaataat |
42474391 |
T |
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| Q |
101 |
gagaaacatagtctacttccctaaagtccgtttctatggaaagcgttgcatatcattctctctcgatgaccacagatgttatcccactaaacagtgtctt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| || ||||||| | |
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| T |
42474392 |
gagaaacagagtctacttccctaaagtccgtttctatggaaagcgttgcatatcattctctcttgatgaccatagatattatcccaccaagcagtgtcgt |
42474491 |
T |
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| Q |
201 |
gacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgc |
259 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474492 |
gacctggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgc |
42474550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 2 - 318
Target Start/End: Original strand, 42467631 - 42467947
Alignment:
| Q |
2 |
gacactaatggaatggaaagaagtgagaacactagatggagtgacacattttgctggttttttgtcatctcattctaggacttacgtcactggaataatg |
101 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42467631 |
gacactaatggaatgaaaagaggtgagaacactagatggagtgacactttttgctagttttttgtcatctcattctaggacttacgtcactggaattatg |
42467730 |
T |
|
| Q |
102 |
agaaacatagtctacttccctaaagtccgtttctatggaaagcgttgcatatcattctctctcgatgaccacagatgttatcccactaaacagtgtcttg |
201 |
Q |
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| T |
42467731 |
agaaacagcgtctacttccctaaagcccatttctatggaaagcgttgcatatcattctctctcgatgaccatagatattatcccactaaacagtgtcttg |
42467830 |
T |
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| Q |
202 |
acttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttggacgt-nnnnnnnttagcagagcaagt-tagcattt |
299 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||| |||||||| ||||||| |
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| T |
42467831 |
actt-gtagaaccaaatgcttttgagaacttat-gattgaaccaccaaaagactttgctggctggatgtaaaaaaaattagcggagcaagtaaagcattt |
42467928 |
T |
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| Q |
300 |
atataatcagttttgtgta |
318 |
Q |
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||||||||||||||||||| |
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| T |
42467929 |
atataatcagttttgtgta |
42467947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 42479827 - 42480093
Alignment:
| Q |
1 |
tgacactaatggaatggaaagaagtgagaacactagatggagtgacacattttgctggttttttgtcatctcattctaggacttacgtcactggaataat |
100 |
Q |
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|||||||||||||||||||||| |||||| ||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42479827 |
tgacactaatggaatggaaagaggtgagatcactaaatggagtaacactttttgctagttttttgtcatctcattctaggacttacgccactggaataat |
42479926 |
T |
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| Q |
101 |
gagaaacatagtctacttccctaaagtccgtttctatggaaagcgttgcatatcattctctctcgatgaccacagatgttatcccactaaacagtgtctt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||| | | ||||||| | |
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| T |
42479927 |
gagaaacagtgtctacttccctaaagtccgtttctatggaaaacgttgcatatcattctctcttgatgaccgtagatattatcccagtgagcagtgtcgt |
42480026 |
T |
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| Q |
201 |
gacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttgga |
267 |
Q |
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||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
42480027 |
gacaaggtagaaccaaatacttttgagaacttctggattgaaccaccaaaagactttactggctgga |
42480093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 42474561 - 42474601
Alignment:
| Q |
278 |
ttagcagagcaagttagcatttatataatcagttttgtgta |
318 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
42474561 |
ttagcagagcaagtaagcatttatataatcagttttgtgta |
42474601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 26046660 - 26046498
Alignment:
| Q |
8 |
aatggaatggaaagaagtgagaacactagatggagtgacacattttgctggttttttgtcatctcattctaggacttacgtcactggaataatgagaaac |
107 |
Q |
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|||||||||| |||| | | |||||||||||||| || | |||||| |||| ||||| |||||||| |||||| || || ||||| ||||| ||| |
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| T |
26046660 |
aatggaatgggaagagctaaaaacactagatggagcaactctatttgctagtttcttgtcttctcattcaaggactgacctccttggaaatatgaggaac |
26046561 |
T |
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| Q |
108 |
atagtctacttccctaaagtccgtttctatggaaagcgttgcatatcattctctctcgatgac |
170 |
Q |
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| T |
26046560 |
agtatctacttctctaaagttcgtttttatggaaagcgttgcatatcattctctcttgatgac |
26046498 |
T |
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