View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_48 (Length: 336)
Name: NF3151_2D_low_48
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 293506 - 293820
Alignment:
| Q |
4 |
attctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatga |
103 |
Q |
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| T |
293506 |
attctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatga |
293605 |
T |
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| Q |
104 |
acaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgccttgca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293606 |
acaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgccttgca |
293705 |
T |
|
| Q |
204 |
acacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagtacgatctccctgtgatatggataactctcc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
293706 |
acacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatctgcaagagtacgatctccctgtgatatggataactctcc |
293805 |
T |
|
| Q |
304 |
aattagtgtatgtta |
318 |
Q |
| |
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|||||||| |||||| |
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| T |
293806 |
aattagtgcatgtta |
293820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 27492541 - 27492235
Alignment:
| Q |
4 |
attctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatga |
103 |
Q |
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||||||||| || | |||||||||||| ||||||||||||||||||||||||||||| | ||| || || || ||||||| ||||||| ||| || ||| |
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| T |
27492541 |
attctttccaattctaaggtctgttgctgcaccaaaatcaatgagtttaatctgccctttttttgtaacaaccaagttggaaggctttacatccctgtga |
27492442 |
T |
|
| Q |
104 |
acaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgccttgca |
203 |
Q |
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|| ||||| || || ||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||| | | ||||| |||| ||||||| |
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| T |
27492441 |
acgatgccagtgtcgtgaattttcttaagagatgtaatgatttggcgcattatttgcttgatgatcaatgcatttctttttgaagagtctataccttgca |
27492342 |
T |
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| Q |
204 |
acacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagtacgatctccctgtgatatggataactctcc |
303 |
Q |
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|| || || ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| || ||||||||||||||||| ||| || | |
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| T |
27492341 |
acgcatttcgaaacatgacagattctaagttcgaagggaagtttttatctgtcatataatcagcaagagtgcggtctccctgtgatatggacaaccctgc |
27492242 |
T |
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| Q |
304 |
aattagt |
310 |
Q |
| |
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||||||| |
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| T |
27492241 |
aattagt |
27492235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 27495236 - 27495080
Alignment:
| Q |
14 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
113 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27495236 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27495137 |
T |
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| Q |
114 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
170 |
Q |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
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| T |
27495136 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27495080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 27501894 - 27501738
Alignment:
| Q |
14 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
113 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27501894 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27501795 |
T |
|
| Q |
114 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
170 |
Q |
| |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
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| T |
27501794 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27501738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 27516686 - 27516530
Alignment:
| Q |
14 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
113 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27516686 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27516587 |
T |
|
| Q |
114 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
170 |
Q |
| |
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| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
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| T |
27516586 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27516530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 27507711 - 27507565
Alignment:
| Q |
14 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
113 |
Q |
| |
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|||| ||| |||||||| ||||||||||||| || ||||||| | || |||| || || || ||||| | ||||||||||| || |||||| |||| | |
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| T |
27507711 |
atcctaagatctgttgctgcaccaaaatcaacgaatttaatccgacctagttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27507612 |
T |
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| Q |
114 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgc |
160 |
Q |
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| |||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
27507611 |
tgtcatgaattttcttaagagatgtaattatctggcgcattatttgc |
27507565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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