View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_52 (Length: 315)
Name: NF3151_2D_low_52
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_52 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 52108649 - 52108952
Alignment:
| Q |
12 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108649 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
52108748 |
T |
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| Q |
112 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108749 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
52108848 |
T |
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| Q |
212 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108849 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
52108948 |
T |
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| Q |
312 |
accc |
315 |
Q |
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|||| |
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| T |
52108949 |
accc |
52108952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 44519922 - 44520224
Alignment:
| Q |
12 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| |||||| |
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| T |
44519922 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcc-aattttttataaataccctaaaatacgaatcatgttttttctcacacta |
44520020 |
T |
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| Q |
112 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520021 |
caacccaaaattaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
44520120 |
T |
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| Q |
212 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
44520121 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcgaccttgaatcac |
44520220 |
T |
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| Q |
312 |
accc |
315 |
Q |
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|||| |
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| T |
44520221 |
accc |
44520224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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