View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_2D_low_54 (Length: 300)

Name: NF3151_2D_low_54
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_2D_low_54
NF3151_2D_low_54
[»] chr5 (15 HSPs)
chr5 (153-268)||(41316358-41316473)
chr5 (157-268)||(41324427-41324538)
chr5 (157-268)||(41310618-41310729)
chr5 (157-268)||(41328325-41328436)
chr5 (157-268)||(41332338-41332449)
chr5 (94-153)||(41311812-41311871)
chr5 (152-257)||(31188417-31188522)
chr5 (26-79)||(41312363-41312416)
chr5 (152-263)||(31225285-31225396)
chr5 (153-257)||(41286378-41286482)
chr5 (180-262)||(31178400-31178482)
chr5 (188-263)||(41366523-41366598)
chr5 (153-230)||(41337305-41337382)
chr5 (263-300)||(41309549-41309586)
chr5 (263-300)||(41320768-41320805)
[»] chr4 (1 HSPs)
chr4 (182-229)||(17249135-17249182)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 41316473 - 41316358
Alignment:
Q  153 atcagttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttg 252  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41316473 atcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttcatcattgctttcttccttgtgaatgcttttg 41316374  T
Q  253 tgatcgtcgataatgt 268  Q
    ||||||||||| ||||    
T  41316373 tgatcgtcgatgatgt 41316358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 41324538 - 41324427
Alignment:
Q  157 gttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttgtgat 256  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  41324538 gttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattcttcattgctatcttccttgtgaatgcttttgtgat 41324439  T
Q  257 cgtcgataatgt 268  Q
    ||||||||||||    
T  41324438 cgtcgataatgt 41324427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 41310729 - 41310618
Alignment:
Q  157 gttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttgtgat 256  Q
    ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41310729 gttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcattgctatcttccttgcgaatgcttttgtgat 41310630  T
Q  257 cgtcgataatgt 268  Q
    ||||||| ||||    
T  41310629 cgtcgatgatgt 41310618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 41328436 - 41328325
Alignment:
Q  157 gttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttgtgat 256  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||    
T  41328436 gttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatacttctgtgat 41328337  T
Q  257 cgtcgataatgt 268  Q
    ||||||| ||||    
T  41328336 cgtcgatgatgt 41328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 41332449 - 41332338
Alignment:
Q  157 gttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttgtgat 256  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||||||    
T  41332449 gttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatcttcatcgttgcttgcttccttgtgaatgcttctgtgat 41332350  T
Q  257 cgtcgataatgt 268  Q
    ||||||| ||||    
T  41332349 cgtcgatgatgt 41332338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 41311871 - 41311812
Alignment:
Q  94 ttagacaatacaaatattttattttgaaagggacaatacaaatattatagacgatcaata 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311871 ttagacaatacaaatattttattttgaaagggacaatacaaatattatagacgatcaata 41311812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 31188417 - 31188522
Alignment:
Q  152 tatcagttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgctttt 251  Q
    |||||||||| ||||  |||||||||| |||||| ||||||||||||||||||  ||| |||||||||||||| ||||| ||||||||||||||| ||||    
T  31188417 tatcagttaatggattatgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgttttt 31188516  T
Q  252 gtgatc 257  Q
     |||||    
T  31188517 atgatc 31188522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 41312416 - 41312363
Alignment:
Q  26 ccaatagaatacaaagtataaacattaaaatttagtacaatcgctgcattcctt 79  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41312416 ccaatagaatacaaagtataaacattaaaatttactacaatcgctgcattcctt 41312363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 31225396 - 31225285
Alignment:
Q  152 tatcagttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgctttt 251  Q
    |||||||||| ||||   ||||||| | |||||| ||||| ||||||||||||  ||| |||||||||||||| ||||| ||||||||||||||| ||||    
T  31225396 tatcagttaatggattaagtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgttttt 31225297  T
Q  252 gtgatcgtcgat 263  Q
     ||||| |||||    
T  31225296 atgatcatcgat 31225285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 41286482 - 41286378
Alignment:
Q  153 atcagttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttg 252  Q
    |||||| || ||||||| |||||| | | |||| ||||||||||||||||||||||| | |||||||||||| ||||| |||||| ||||| | |||||     
T  41286482 atcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttcatctttgctttcttccatgtgacttctttta 41286383  T
Q  253 tgatc 257  Q
    |||||    
T  41286382 tgatc 41286378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 31178400 - 31178482
Alignment:
Q  180 attttcttgttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttgtgatcgtcga 262  Q
    |||||| ||||||||||||| |||  |||| |||||||||||||| ||||| ||||||||||||||| |||| ||||| ||||    
T  31178400 attttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcga 31178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 41366598 - 41366523
Alignment:
Q  188 gttgaatcttgagaagaacatctactagatcttcatcattgctatcttccttgtgaatgcttttgtgatcgtcgat 263  Q
    ||||||||||||||||||||||||||||||| ||||  || ||| ||| ||||||| | ||||||||||| |||||    
T  41366598 gttgaatcttgagaagaacatctactagatcatcattcttcctagctttcttgtgactacttttgtgatcatcgat 41366523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 41337382 - 41337305
Alignment:
Q  153 atcagttaaaggatgttgtgagtgataattttcttgttgaatcttgagaagaacatctactagatcttcatcattgct 230  Q
    |||||| || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| |||||||| |||||    
T  41337382 atcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgct 41337305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 41309586 - 41309549
Alignment:
Q  263 taatgtgggtcataattctacgatttgtaggtatattt 300  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  41309586 taatgtgggtcataattctgcgatttgtaggtatattt 41309549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 41320805 - 41320768
Alignment:
Q  263 taatgtgggtcataattctacgatttgtaggtatattt 300  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  41320805 taatgtgggtcataattctgcaatttgtaggtatattt 41320768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 17249135 - 17249182
Alignment:
Q  182 tttcttgttgaatcttgagaagaacatctactagatcttcatcattgc 229  Q
    |||||||||||||||||| |||| |||| |||||||||||||| ||||    
T  17249135 tttcttgttgaatcttgataagagcatcaactagatcttcatccttgc 17249182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University