View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_55 (Length: 298)
Name: NF3151_2D_low_55
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 5688048 - 5687751
Alignment:
| Q |
18 |
atttgtttacttggttcaagagtcttggaacggttagagtggtgaccgtggtatgaattgtggcattttttgttttccaatcactatcctatattattat |
117 |
Q |
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| T |
5688048 |
atttgtttacttggttcaagagtcttggaacggttagagtggtgaccgtggtatgaattgtggcattttttgttttccaatcactatcctatattattat |
5687949 |
T |
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| Q |
118 |
caaatgatccatggccaagacatataagggttcaatctagactcaagtttgagaatggtttggcttgtagatcctgatt--------------------t |
197 |
Q |
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| T |
5687948 |
caaatgatccaaggccaagacatataagggttcaatctagactcaagtttgagaat-gtttggcttgtagatcctgatttcagtggcttttgttcatgat |
5687850 |
T |
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| Q |
198 |
cagtggcacaattataataaggattaacaaatagagcaaaaattgaattgatgtgggtc--atatctctgtaatttgaccatgtattatttacaacacc |
294 |
Q |
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| T |
5687849 |
cagtggcacaattataataaggattaacaaatagagcaaaaattgaattgatgtgggtcatatatctctgtaatttgaccatgtattatttacaccacc |
5687751 |
T |
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