View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_low_6 (Length: 898)
Name: NF3151_2D_low_6
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 764; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 20 - 883
Target Start/End: Original strand, 180417 - 181280
Alignment:
| Q |
20 |
ccaacacccttttacctttaagaagcttcatagccatcttctcgcacatgaggactacctgcgtcgagaagttgttcaggttgacattcaagtacctaca |
119 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
180417 |
ccaacacccttttaccttcgagaagcttcatagccctcttctcgcacatgaggactacatgcgtcgagaagctgttcaggttgacattcaagtacctaca |
180516 |
T |
|
| Q |
120 |
gcgaatttcgctcatcacacctctccaaatcaacgcagctcaaaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
180517 |
gcgaatttcgctcatcacacctctccaaatcaacgcagctcgaaagatgatggtatccttccaattccatccccggggcgtggtaacaatttctctaaac |
180616 |
T |
|
| Q |
220 |
aatctcagtaccatggatccactactcgtgggtctaactatcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
180617 |
aatctcagtaccatggatccactactcgtgggtctaactatcgtggtagaggtcgaggtttcaactcatgtggaaatagacttccaccaagatgtcaact |
180716 |
T |
|
| Q |
320 |
ctgctctttccttggccatattgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
180717 |
ctgctctttccttggccatattgctaagtaatgtcctccgctgcggcaacgcaacaatcaaccaatggcaaatttcgcttctacttcacattcggctgct |
180816 |
T |
|
| Q |
420 |
cctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcaga |
519 |
Q |
| |
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|||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
180817 |
cctaactgggtgttcgacactagagccagtcatcatataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcaga |
180916 |
T |
|
| Q |
520 |
ttggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaa |
619 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
180917 |
ttggtgatggtacaggtttgaatatttcacatgttggctctattaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaa |
181016 |
T |
|
| Q |
620 |
tgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacg |
719 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
181017 |
tgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacg |
181116 |
T |
|
| Q |
720 |
ggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcct |
819 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
181117 |
ggggtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcct |
181216 |
T |
|
| Q |
820 |
ccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
883 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
181217 |
caccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
181280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 20 - 883
Target Start/End: Original strand, 1700844 - 1701707
Alignment:
| Q |
20 |
ccaacacccttttacctttaagaagcttcatagccatcttctcgcacatgaggactacctgcgtcgagaagttgttcaggttgacattcaagtacctaca |
119 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
1700844 |
ccaacacccttttacctttgaggagcttcatagccatcttctcgcacatgatgactacctgcgtcgagaagctgttcaggttgacattcaagtacctaca |
1700943 |
T |
|
| Q |
120 |
gcgaatttcgctcatcacacctctccaaatcaacgcagctcaaaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | || |||||||||||||||||||||| |
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|
| T |
1700944 |
gcgaatttcgctcatcacacctctccaaatcaacgcagctcaaaggatgatggtatccttccaattccatccacaggacgtggtaacaatttctctaaac |
1701043 |
T |
|
| Q |
220 |
aatctcagtaccatggatccactactcgtgggtctaactatcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaact |
319 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1701044 |
aatcccagcaccatggatccaatactcgtgggtctaactatcgtggtagaggtcgaggtttcaactcacgtggaaatagacctccaccaagatgtcaact |
1701143 |
T |
|
| Q |
320 |
ctgctctttccttggccatattgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgct |
419 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| ||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
1701144 |
ctgctctttgcttggccatattgctaagtattgtcctcagctgctacaacgcaacaatcaaccagtggcaaatttcgcttctgcttcacattcggctgct |
1701243 |
T |
|
| Q |
420 |
cctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcaga |
519 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |
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|
| T |
1701244 |
cctaactgggtgttcgacacaggagccagtcatcatataacatcaaatctgaacaatatgcagctgcactccgaatatgacggtccagaagaagttcaga |
1701343 |
T |
|
| Q |
520 |
ttggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaa |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1701344 |
ttggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaa |
1701443 |
T |
|
| Q |
620 |
tgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacg |
719 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1701444 |
tgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacg |
1701543 |
T |
|
| Q |
720 |
ggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcct |
819 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
1701544 |
ggggcgacgttgatgcgcggttcaagtaacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcct |
1701643 |
T |
|
| Q |
820 |
ccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
883 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1701644 |
ccccttctttatggcatgctcgtttcggtcatccctctttcagagttcttgcacaaatgatgtc |
1701707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 418 - 556
Target Start/End: Complemental strand, 26593191 - 26593053
Alignment:
| Q |
418 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
517 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| |||| ||| | |||||||||| |||||||| ||||||| ||||||||||| || |||||||| || |
|
|
| T |
26593191 |
ctcctaattgggtgtttgatactggggccagccatcatatcagcacaaatctgaataatatgcacattcactctgaatatgatggcccagaagaagtgca |
26593092 |
T |
|
| Q |
518 |
gattggtgatggtacaggtttgaaaatttcacatgttgg |
556 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26593091 |
aattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 418 - 561
Target Start/End: Original strand, 5399981 - 5400124
Alignment:
| Q |
418 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || ||||||||||||||||| |||||||| |
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|
| T |
5399981 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtcccgaggaagttca |
5400080 |
T |
|
| Q |
518 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
561 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5400081 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 418 - 561
Target Start/End: Original strand, 3540978 - 3541121
Alignment:
| Q |
418 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || |||||||||||||| || |||||||| |
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|
| T |
3540978 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtccagaggaagttca |
3541077 |
T |
|
| Q |
518 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
561 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3541078 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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