View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_low_63 (Length: 271)
Name: NF3151_2D_low_63
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_63 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 45552745 - 45552913
Alignment:
| Q |
19 |
agattggttgttcggaaaacttatacaatagtttatagtttatggtataggaaagtttggattggtttgtttaagtttcaacaacagccttacaacaaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45552745 |
agattggttgttcggaaaacttatacaatagtttatagtttatggtataggaaagtttggattggtttgtttacgtttcaacaacagccttacaacaaat |
45552844 |
T |
|
| Q |
119 |
gatgttttcggtatttttaagctgcaagatccgaacaacttttctccccaacgagggtatataacaggt |
187 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45552845 |
gatgtttttggtatttttaagctgcaagatcccaacaacttttctccccaatgagggtatataacaggt |
45552913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 45553063 - 45552973
Alignment:
| Q |
181 |
aacaggtcataaaaagaagcaagagtttcttttttcatcctccacatttgcttcgaataatgaaatatgatgacttataatccaaaaaact |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45553063 |
aacaggtcataaaaagaagcaagagtttcttttttcatcctccacatttgcttcgaataatgaaatatgatgacttataatccaaaaaact |
45552973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University