View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_2D_low_70 (Length: 259)
Name: NF3151_2D_low_70
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_70 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 34583996 - 34584195
Alignment:
| Q |
1 |
caacgttttatatgttaaatgatgaaatcaatttaggtttattctcatatattaattttgcaaaggcattgtcttatattcgtttttcattgatgtcctc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34583996 |
caacgttttatatgttaaatga---aatcaatttaggtttattctcatatattaattttgcaaaggcattgtcttatattcgtttttcattgatctcct- |
34584091 |
T |
|
| Q |
101 |
ttttgttagcatttatgtttttgacatttgcagtatgatgctgagctacttttttaaataaaggccaagataacatcaaaatattgaatacaaagaaaat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584092 |
ttttgttagcatatatgtttttgacatttgcagtatgatgctgagctacttttttaaataaaggccaagataacatcaaaatattgaatacaaagaaaat |
34584191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 34584217 - 34584274
Alignment:
| Q |
202 |
aggtatgtttttatgggtgaagcttatccatctagtgattgaattggaaatcggattt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34584217 |
aggtatgtttttatgggtgaagcttatccatctagtgattgtattggaaatcggattt |
34584274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 34578464 - 34578547
Alignment:
| Q |
173 |
acatcaaaatattgaatacaaagaaaatgaggtatgtttttatgggtgaagcttatccatctagtgattgaattggaaatcggattt |
259 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34578464 |
acatgaaaatattgaatagaaagaaaatgagg---agttttatgggtgaagcttatccatctagtgattgaattgcaaatcggattt |
34578547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University