View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_2D_low_80 (Length: 244)
Name: NF3151_2D_low_80
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_2D_low_80 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 28608977 - 28609207
Alignment:
| Q |
1 |
gcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggtaaagctgcaatagtggacaccacaagtcatgataaag |
100 |
Q |
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| T |
28608977 |
gcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcctgtttggtaaagctgcaatagtggacaccacaagtcatgataaag |
28609076 |
T |
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| Q |
101 |
caaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatga |
200 |
Q |
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| T |
28609077 |
caaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacaacaatga |
28609176 |
T |
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| Q |
201 |
ttctatatcttattcagaagttgatgtccat |
231 |
Q |
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| T |
28609177 |
ttctatatcttattcagaagttgatgtccat |
28609207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 437927 - 437697
Alignment:
| Q |
1 |
gcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggtaaagctgcaatagtggacaccacaagtcatgataaag |
100 |
Q |
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| T |
437927 |
gcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgctcctgtttgataatgctgaaatagtagacacctcaagtcatgctgaac |
437828 |
T |
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| Q |
101 |
caaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatga |
200 |
Q |
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| T |
437827 |
cacaagggatactatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatgtgaatggatttagattgacagcgatgaacaacaatga |
437728 |
T |
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| Q |
201 |
ttctatatcttattcagaagttgatgtccat |
231 |
Q |
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| T |
437727 |
ttctatatcttattcagaagttaatgtccat |
437697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 13660453 - 13660578
Alignment:
| Q |
106 |
ggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattcta |
205 |
Q |
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| T |
13660453 |
ggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattcta |
13660552 |
T |
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| Q |
206 |
tatcttattcagaagttgatgtccat |
231 |
Q |
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| T |
13660553 |
tatcatattcggaggttgatgtccat |
13660578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 13652957 - 13653078
Alignment:
| Q |
110 |
tattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatc |
209 |
Q |
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| T |
13652957 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatc |
13653056 |
T |
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| Q |
210 |
ttattcagaagttgatgtccat |
231 |
Q |
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| T |
13653057 |
ctattcagaggttgatgtccat |
13653078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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