View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_2D_low_91 (Length: 220)

Name: NF3151_2D_low_91
Description: NF3151_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_2D_low_91
NF3151_2D_low_91
[»] chr2 (3 HSPs)
chr2 (1-123)||(34583996-34584114)
chr2 (116-192)||(34583865-34583941)
chr2 (116-172)||(34578266-34578322)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 34583996 - 34584114
Alignment:
Q  1 caacgttttatatgttaaatgatgaaatcaatttaggtttattctcatatattaattttgcaaaggcattgtcttatattcgtttttcattgatgtcctc 100  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  34583996 caacgttttatatgttaaatga---aatcaatttaggtttattctcatatattaattttgcaaaggcattgtcttatattcgtttttcattgatctcct- 34584091  T
Q  101 ttttgttagcatttatgtttttg 123  Q
    |||||||||||| ||||||||||    
T  34584092 ttttgttagcatatatgtttttg 34584114  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 34583941 - 34583865
Alignment:
Q  116 tgtttttgcataacttgactcaaagttacaccattttggacacttgattgggattttttatatctctggtctagggg 192  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  34583941 tgtttttgcataacttgactcaaagttacaccattttggacacatgattgggattttttatatctctggtcaagggg 34583865  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 34578322 - 34578266
Alignment:
Q  116 tgtttttgcataacttgactcaaagttacaccattttggacacttgattgggatttt 172  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  34578322 tgtttttgcataacttgactcaaagttacacaattttggacacatgattgggatttt 34578266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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