View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3152_high_1 (Length: 645)

Name: NF3152_high_1
Description: NF3152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3152_high_1
NF3152_high_1
[»] chr1 (37 HSPs)
chr1 (10-358)||(5178578-5178939)
chr1 (387-629)||(5178940-5179184)
chr1 (302-462)||(52008915-52009076)
chr1 (124-297)||(52112319-52112492)
chr1 (154-301)||(11802906-11803054)
chr1 (122-257)||(48502532-48502667)
chr1 (546-629)||(52009124-52009206)
chr1 (127-302)||(13643546-13643722)
chr1 (152-249)||(33255184-33255281)
chr1 (152-249)||(33275356-33275453)
chr1 (126-269)||(13969099-13969242)
chr1 (126-243)||(50127374-50127490)
chr1 (124-244)||(15419676-15419795)
chr1 (182-301)||(33827793-33827912)
chr1 (182-301)||(33840053-33840172)
chr1 (125-244)||(26855852-26855969)
chr1 (125-241)||(31884488-31884603)
chr1 (181-248)||(25161437-25161504)
chr1 (152-239)||(50295235-50295322)
chr1 (126-203)||(16963641-16963716)
chr1 (220-301)||(37276609-37276692)
chr1 (126-301)||(48282857-48283023)
chr1 (182-241)||(44109099-44109158)
chr1 (227-274)||(50295330-50295377)
chr1 (176-274)||(2356373-2356470)
chr1 (122-220)||(27742521-27742617)
chr1 (364-461)||(32462556-32462654)
chr1 (363-465)||(46874558-46874660)
chr1 (128-294)||(30627588-30627755)
chr1 (156-244)||(26829492-26829580)
chr1 (363-436)||(15504683-15504755)
chr1 (216-302)||(39283349-39283433)
chr1 (130-163)||(19068195-19068228)
chr1 (130-163)||(19116085-19116118)
chr1 (126-195)||(20471727-20471795)
chr1 (126-195)||(20559742-20559810)
chr1 (176-241)||(50468835-50468900)
[»] chr4 (19 HSPs)
chr4 (125-301)||(50086601-50086776)
chr4 (122-299)||(16072308-16072486)
chr4 (130-274)||(6480665-6480810)
chr4 (125-275)||(40161028-40161177)
chr4 (152-271)||(30116742-30116861)
chr4 (180-271)||(27655328-27655421)
chr4 (154-268)||(49649889-49650003)
chr4 (152-241)||(41377197-41377286)
chr4 (179-270)||(42810387-42810478)
chr4 (153-268)||(50095252-50095367)
chr4 (197-274)||(21416205-21416282)
chr4 (153-261)||(14815371-14815480)
chr4 (147-211)||(21416128-21416192)
chr4 (174-296)||(31241923-31242047)
chr4 (124-243)||(31647690-31647808)
chr4 (182-243)||(38320145-38320206)
chr4 (128-211)||(22280312-22280394)
chr4 (126-271)||(27284042-27284187)
chr4 (189-299)||(41142262-41142374)
[»] chr6 (13 HSPs)
chr6 (124-299)||(17900713-17900890)
chr6 (147-299)||(11101891-11102044)
chr6 (127-302)||(22297543-22297719)
chr6 (154-273)||(19418593-19418712)
chr6 (124-296)||(26608878-26609051)
chr6 (128-262)||(10252938-10253072)
chr6 (150-275)||(31577876-31578001)
chr6 (153-302)||(10008190-10008340)
chr6 (152-211)||(1970905-1970964)
chr6 (182-239)||(17506292-17506349)
chr6 (126-273)||(21809802-21809948)
chr6 (176-223)||(29403599-29403646)
chr6 (189-302)||(6770867-6770982)
[»] chr7 (16 HSPs)
chr7 (124-295)||(19777887-19778058)
chr7 (125-270)||(26203018-26203162)
chr7 (122-297)||(7833714-7833891)
chr7 (163-300)||(1703841-1703980)
chr7 (156-277)||(11740353-11740474)
chr7 (126-274)||(48984345-48984492)
chr7 (122-243)||(41434671-41434788)
chr7 (125-243)||(8117470-8117587)
chr7 (124-302)||(45907001-45907178)
chr7 (198-302)||(11736099-11736207)
chr7 (154-211)||(11736224-11736281)
chr7 (182-243)||(16861703-16861764)
chr7 (182-243)||(22035758-22035819)
chr7 (176-239)||(3624254-3624317)
chr7 (154-244)||(33194720-33194810)
chr7 (126-299)||(24937802-24937976)
[»] chr3 (24 HSPs)
chr3 (122-299)||(29458000-29458179)
chr3 (124-268)||(20585773-20585917)
chr3 (125-270)||(26835696-26835841)
chr3 (126-302)||(44291196-44291372)
chr3 (124-298)||(49452577-49452751)
chr3 (124-222)||(32961150-32961247)
chr3 (148-269)||(45054379-45054500)
chr3 (153-298)||(14622091-14622238)
chr3 (126-277)||(35483565-35483716)
chr3 (150-269)||(30863626-30863747)
chr3 (219-297)||(32961504-32961582)
chr3 (123-243)||(43862909-43863028)
chr3 (124-275)||(15671111-15671261)
chr3 (123-243)||(42163633-42163752)
chr3 (176-241)||(17109563-17109628)
chr3 (124-241)||(32720549-32720664)
chr3 (180-236)||(49419085-49419141)
chr3 (126-301)||(42437682-42437857)
chr3 (185-243)||(44041351-44041409)
chr3 (182-299)||(27144025-27144145)
chr3 (124-243)||(36436552-36436671)
chr3 (182-244)||(35322035-35322096)
chr3 (198-271)||(4020140-4020213)
chr3 (134-162)||(34681201-34681229)
[»] chr8 (20 HSPs)
chr8 (122-253)||(22266239-22266368)
chr8 (124-267)||(38388490-38388634)
chr8 (127-260)||(24757057-24757187)
chr8 (152-269)||(1988776-1988893)
chr8 (155-296)||(34832274-34832417)
chr8 (124-268)||(1551464-1551607)
chr8 (158-275)||(35762292-35762408)
chr8 (124-244)||(37919368-37919487)
chr8 (199-300)||(13904004-13904105)
chr8 (176-268)||(9791862-9791953)
chr8 (185-275)||(37564779-37564869)
chr8 (126-231)||(39065572-39065676)
chr8 (125-271)||(41726865-41727011)
chr8 (131-299)||(39534107-39534275)
chr8 (182-244)||(20821916-20821978)
chr8 (190-244)||(28462569-28462623)
chr8 (421-485)||(11475475-11475539)
chr8 (176-244)||(14110639-14110706)
chr8 (262-302)||(35467792-35467832)
chr8 (128-208)||(38362265-38362344)
[»] chr2 (14 HSPs)
chr2 (125-293)||(35501370-35501538)
chr2 (125-295)||(19994891-19995062)
chr2 (153-299)||(19606241-19606387)
chr2 (122-275)||(43248667-43248820)
chr2 (122-269)||(41385006-41385152)
chr2 (124-239)||(16498137-16498252)
chr2 (154-277)||(36622101-36622225)
chr2 (123-299)||(1870462-1870639)
chr2 (176-277)||(143884-143986)
chr2 (190-260)||(40664661-40664731)
chr2 (122-275)||(40574137-40574290)
chr2 (124-165)||(11610513-11610554)
chr2 (124-302)||(3689584-3689762)
chr2 (156-273)||(27896463-27896580)
[»] chr5 (13 HSPs)
chr5 (125-301)||(8435026-8435204)
chr5 (125-302)||(19129691-19129871)
chr5 (123-299)||(35556850-35557027)
chr5 (124-275)||(2611142-2611293)
chr5 (125-296)||(7609513-7609683)
chr5 (124-302)||(14863305-14863484)
chr5 (204-299)||(26139710-26139807)
chr5 (185-274)||(10568975-10569063)
chr5 (122-241)||(21052656-21052774)
chr5 (125-219)||(7319227-7319321)
chr5 (123-208)||(28812257-28812342)
chr5 (182-241)||(11320151-11320210)
chr5 (126-252)||(16801998-16802123)
[»] scaffold0005 (1 HSPs)
scaffold0005 (153-261)||(24231-24340)
[»] scaffold0886 (1 HSPs)
scaffold0886 (182-241)||(1133-1192)
[»] scaffold0034 (1 HSPs)
scaffold0034 (125-244)||(22449-22567)
[»] scaffold0006 (1 HSPs)
scaffold0006 (122-241)||(38769-38886)
[»] scaffold1372 (1 HSPs)
scaffold1372 (208-301)||(1238-1332)
[»] scaffold0045 (2 HSPs)
scaffold0045 (181-268)||(60429-60516)
scaffold0045 (181-268)||(67761-67848)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 5178578 - 5178939
Alignment:
Q  10 aagaatatttaacttgaataattaaaatttcggtcc-----------gggtcaagcaatttggtcctccattttacggtcctctgaatcaaagaaagtca 98  Q
    ||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||| | ||||||||||| |||    
T  5178578 aagaatatttaacttgaataattaaaatttcggtcctcaaaattttagggtcaagcaatttggtcctccattttacggtcctataaatcaaagaaattca 5178677  T
Q  99 atcaattgaaaaccatatttactaaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgat 198  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |    
T  5178678 atcaattgaaaacactatttactaaaaggagaatgttaaccagtgcccccacggcattggttaagcagctaaaataggtaaaattttattaaaaagtggt 5178777  T
Q  199 gtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcgg-ggcactggttaacaaga 296  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |||| ||||||||||||    
T  5178778 gtaataattagttagtaaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaacgagtgtcccggaggcattggttaacaaga 5178877  T
Q  297 cccttactaaaaatgcatcaaaagttcaaaactactgaaagaccttatgttttacttgaata 358  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  5178878 cccttactaaaaatgcatcaaaagttcaaaactaccgaaagacctaatgttttacttgaata 5178939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 387 - 629
Target Start/End: Original strand, 5178940 - 5179184
Alignment:
Q  387 atagaatctctaaacttgtgatgctaaatttgaaaaatgactaaattgacggacattgttcacgttaagggactaaatagcaattttgtaactttgaggc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178940 atagaatctctaaacttgtgatgctaaatttgaaaaatgactaaattgacggacattgttcacgttaagggactaaatagcaattttgtaactttgaggc 5179039  T
Q  487 actaaatcaatgaacctttcaaaatgactataatgacgatttactacttg---nnnnnnnngtaagggtggaagtggaattacatcattccaaagcgtct 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||||||||||||||||||||||||    
T  5179040 actaaatcaatgaacctttcaaaatgactataatgacgatttactacttgaaaaaaaaaaagcaagggtggaagtggaattacatcattccaaagcgtct 5179139  T
Q  584 tgtaagcttgtgaaatgagattgcagtggtcaggtaggggtggaac 629  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  5179140 tgtaagcttgtgaaatgagattgcagtggtca-gtaggggtggaac 5179184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 302 - 462
Target Start/End: Original strand, 52008915 - 52009076
Alignment:
Q  302 actaaaaatgcatcaaaagttcaaaactactgaaagaccttatgttttacttgaatagtcggtctcttgctgcgtcaagacaaacatagaatctctaaac 401  Q
    |||||||||| |||||||||||||||  |||||||||||| ||||||||||||| |||||||||||||||||| |||| |||| ||||||| ||||||||    
T  52008915 actaaaaatgtatcaaaagttcaaaaacactgaaagacctaatgttttacttgagtagtcggtctcttgctgcatcaaaacaagcatagaacctctaaac 52009014  T
Q  402 ttgtgatgctaaatttgaaaaatgactaaattgac-ggacattgttcacgttaagggactaa 462  Q
    |||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  52009015 ttgtgatgttgaatatgaaaaatgactaaattgacaggacattgttcgcgttaagggactaa 52009076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 124 - 297
Target Start/End: Original strand, 52112319 - 52112492
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||  || |||||||||||||||| ||||||| ||||||| | ||||||||    
T  52112319 aaggagaatgttaacaagtgcccccggagcattggttaagcagctaaaagagaaaagattttattaaaaagtggtgtaatagttagttagt-aaaagtaa 52112417  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagt-gctcggggcactggttaacaagac 297  Q
    | ||||||||||| |||||||||||||||| | |||||||||||||||||  | ||||||||| |||||||||||    
T  52112418 ccgtttatgtttcaaagacaatttttctacctatggattccttaaccagtaccccggggcactagttaacaagac 52112492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 154 - 301
Target Start/End: Original strand, 11802906 - 11803054
Alignment:
Q  154 attggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctac 253  Q
    ||||||||||||||||||| |   || | ||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||    
T  11802906 attggttaagcagctaaaagactaaagaatttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttccaaaacaatttttctac 11803005  T
Q  254 ttttggattccttaaccagtg-ctcggggcactggttaacaagaccctt 301  Q
    ||||||||||||||||| ||| | || ||||| ||||||||||| ||||    
T  11803006 ttttggattccttaaccggtgccccgaggcaccggttaacaagatcctt 11803054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 48502532 - 48502667
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    |||| ||||||||||||| ||  | ||||||||||||||||| | |  ||| ||||||||||||||||||||||  ||||||||||||||| | ||||||    
T  48502532 aaaatgagaatgttaacccgtatctccggagcattggttaagtaacctaaagaggtaaaattttattaaaaagttgtgtaataattagttagtcaaaagt 48502631  T
Q  222 aacagtttatgtttccaagacaatttttctactttt 257  Q
    ||||| |||| ||| |||||||||||||||||||||    
T  48502632 aacagcttatattttcaagacaatttttctactttt 48502667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 546 - 629
Target Start/End: Original strand, 52009124 - 52009206
Alignment:
Q  546 taagggtggaagtggaattacatcattccaaagcgtcttgtaagcttgtgaaatgagattgcagtggtcaggtaggggtggaac 629  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  52009124 taaggatgaaagtggaattacatcattccaaagcgtcttgtaagcttgtgaaatgagattgcaatggtc-cgtaggggtggaac 52009206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 302
Target Start/End: Original strand, 13643546 - 13643722
Alignment:
Q  127 gagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacag 226  Q
    |||||| |||||| ||| | | || |||||| |||||||||||||| |  |||||||||||||||| ||| ||||||||||| ||  | ||||||||| |    
T  13643546 gagaatattaaccggtgtctctggggcattgattaagcagctaaaagaaataaaattttattaaaa-gtggtgtaataattaatttgtcaaaagtaacgg 13643644  T
Q  227 tttatgtttccaagacaatttttctacttttggattccttaaccagtgc-tc-ggggcactggttaacaagaccctta 302  Q
    ||||| ||| ||||||||||||| ||||| || |||||||||||| ||| || |||| |  |||||||||||||||||    
T  13643645 tttatattttcaagacaatttttttacttatgaattccttaaccaatgcatcaggggtatcggttaacaagaccctta 13643722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 33255281 - 33255184
Alignment:
Q  152 gcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaattttt 249  Q
    |||||| |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| |||  ||||||||||||    
T  33255281 gcattgattaagcagttaaaagagataaaattttatcaaaaaatgatgtaataattagttaataaaaaataatagtttatatttttaagacaattttt 33255184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 33275453 - 33275356
Alignment:
Q  152 gcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaattttt 249  Q
    |||||| |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| |||  ||||||||||||    
T  33275453 gcattgattaagcagttaaaagagataaaattttatcaaaaaatgatgtaataattagttaataaaaaataatagtttatatttttaagacaattttt 33275356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 13969242 - 13969099
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    ||||||||||||||||||||||  ||| |||||||||||| | |||| | ||||  |||||| ||||| |  ||||||||||| ||||| ||||||||||    
T  13969242 ggagaatgttaaccagtgccccaagagtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaaca 13969143  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaac 269  Q
     ||||| ||| ||||||||  |||||| || | |||||||||||    
T  13969142 ttttatattttcaagacaaaatttctatttgtagattccttaac 13969099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 50127490 - 50127374
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    ||||||||||||||||||||||||| |||||||||||| | | |||| | ||||  |||||||||||||| ||||||| |||| |  ||||||| | |||    
T  50127490 ggagaatgttaaccagtgcccccggggcattggttaagta-ccaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaaatgaca 50127392  T
Q  226 gtttatgtttccaagaca 243  Q
    |||||| |||||||||||    
T  50127391 gtttatatttccaagaca 50127374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 15419795 - 15419676
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||||||| |||||| ||| | |||||||||||||||| || | || | || |||| |||||||||||||| || |||| |||| ||||||||||||||    
T  15419795 aaggagaatattaacccgtgtctccggagcattggttaaacaccaaataaag-taaatttttattaaaaagtaatataattattacttaataaaaagtaa 15419697  T
Q  224 cagtttatgtttccaagacaa 244  Q
    |||||||| ||||||| ||||    
T  15419696 cagtttatatttccaatacaa 15419676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 33827912 - 33827793
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca-atttttctacttttggattccttaaccagtgctcggg 280  Q
    |||||||||||||| ||||||| |||| |||||||||||| |  |||||| ||||||||||| |   || || || | ||||||||||||||||||| ||    
T  33827912 ttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttatttatagattccttaaccagtgctc-gg 33827814  T
Q  281 gcactggttaacaagaccctt 301  Q
    ||||| |||||||||||||||    
T  33827813 gcactagttaacaagaccctt 33827793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 33840053 - 33840172
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca-atttttctacttttggattccttaaccagtgctcggg 280  Q
    |||||||||||||| ||||||| |||| |||||||||||| |  |||||| ||||||||||| |   || || || | ||||||||||||||||||| ||    
T  33840053 ttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttatttatagattccttaaccagtgctc-gg 33840151  T
Q  281 gcactggttaacaagaccctt 301  Q
    ||||| |||||||||||||||    
T  33840152 gcactagttaacaagaccctt 33840172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 26855969 - 26855852
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    ||||||||||||||| ||||| |||| |||||||||||||| | |||  | ||||| ||||||| |||||| ||||||| |||| || ||||||||| ||    
T  26855969 aggagaatgttaaccggtgcctccggggcattggttaagca-ccaaataaagtaaatttttatt-aaaagtaatgtaattattacttgataaaaagtgac 26855872  T
Q  225 agtttatgtttccaagacaa 244  Q
    || |||| ||||||||||||    
T  26855871 agattatatttccaagacaa 26855852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 31884603 - 31884488
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||||||||||||||| |||||| |  |||||||||||||| | |||| || |||  |||||||||||||| ||||||| |||| || ||||||| |  |    
T  31884603 aggagaatgttaaccattgccccggaggcattggttaagcaccaaaaaaag-taagtttttattaaaaagtaatgtaattattatttgataaaaaatgtc 31884505  T
Q  225 agtttatgtttccaaga 241  Q
    ||||||| |||||||||    
T  31884504 agtttatatttccaaga 31884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 25161504 - 25161437
Alignment:
Q  181 attttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttt 248  Q
    |||||||||||||||| ||||||||||||||| |||||  ||||||||||| |||| ||| |||||||    
T  25161504 attttattaaaaagtggtgtaataattagttagtaaaatataacagtttatatttcgaaggcaatttt 25161437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 50295235 - 50295322
Alignment:
Q  152 gcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaa 239  Q
    ||||||||||||||||||||| | || | |||||| |||||| || ||||||||||||||  | |||| ||||||||||| |||||||    
T  50295235 gcattggttaagcagctaaaagaagtgagattttagtaaaaaatgttgtaataattagttggttaaaaataacagtttatatttccaa 50295322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 16963716 - 16963641
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaat 203  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||  | ||||| |||||||||||||| |||||||    
T  16963716 ggagaatgttaaccagtg-ccccggagcattggttaagca-ccaaatgaagtaaatttttattaaaaagtaatgtaat 16963641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 37276609 - 37276692
Alignment:
Q  220 gtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgctc--ggggcactggttaacaagaccctt 301  Q
    |||||| ||||||||||||||||||  |||||| |  ||| ||||||||||| |||||  |||||||| |||||||||||||||    
T  37276609 gtaacattttatgtttccaagacaaaatttctattaatgggttccttaaccaatgctccgggggcactagttaacaagaccctt 37276692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 301
Target Start/End: Complemental strand, 48283023 - 48282857
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    ||||||||||||||||||||||||| |||||||||||||| |           |  ||||| |||||||| ||||||| ||||  | ||||||||| |||    
T  48283023 ggagaatgttaaccagtgcccccggggcattggttaagcacc-----------agtttttactaaaaagtaatgtaattattacctgataaaaagtgaca 48282935  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaaccagtgctc--ggggcactggttaacaagaccctt 301  Q
    | |||| ||| |||||||    ||||| || | ||||||||||||||||| |  ||||||| ||||||||||||||||    
T  48282934 gattatattttcaagacagaaattctatttatagattccttaaccagtgccccgggggcaccggttaacaagaccctt 48282857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 44109158 - 44109099
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaaga 241  Q
    |||||||||||||| ||||||| |||| |||||||||||  ||||||||| |||||||||    
T  44109158 ttttattaaaaagtaatgtaattattacttaataaaaagggacagtttatatttccaaga 44109099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 50295330 - 50295377
Alignment:
Q  227 tttatgtttccaagacaatttttctacttttggattccttaaccagtg 274  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  50295330 tttatatttccaaaacaatttttctacttttggattccttaatcagtg 50295377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 2356470 - 2356373
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg 274  Q
    |||| |||||||| ||||||  ||||||| ||||||  | |||| ||||| ||||| |||  |||||||||||| ||||||||||||||| ||||||||    
T  2356470 gtaagattttatttaaaagttgtgtaata-ttagttggtcaaaaataacaatttatatttttaagacaatttttttacttttggattcctcaaccagtg 2356373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 27742521 - 27742617
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaag 220  Q
    |||||||||||||||||  |||  ||||| |||||||||||||| | |||| | ||||  |||||||||||||| ||||||| |||| |||||||||||    
T  27742521 aaaaggagaatgttaactggtgttcccgg-gcattggttaagcaac-aaaagaagtaattttttattaaaaagtaatgtaattattacttaataaaaag 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 461
Target Start/End: Complemental strand, 32462654 - 32462556
Alignment:
Q  364 tctcttgctgcgtcaagacaaacatagaatctctaaacttgtgatgctaaatttga-aaaatgactaaattgacggacattgttcacgttaagggacta 461  Q
    |||||||||||  ||||||||  |||||| || |||| ||||| || ||||||||| ||||||||||||||||| ||||| |||||  ||||| |||||    
T  32462654 tctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagagacta 32462556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 465
Target Start/End: Complemental strand, 46874660 - 46874558
Alignment:
Q  363 gtctcttgctgcgtcaagacaaacatagaatctctaaacttgtgatgctaaatttgaaaaatgactaaattgacggacattgttcacgttaagggactaa 462  Q
    |||||||| ||| |||||| |||||||||||||  ||| |||||    ||||||||||||||||||||||||||  |  |||||||  ||||||| ||||    
T  46874660 gtctcttgatgcatcaagataaacatagaatcttcaaaattgtggccgtaaatttgaaaaatgactaaattgacttaagttgttcaatttaaggggctaa 46874561  T
Q  463 ata 465  Q
    |||    
T  46874560 ata 46874558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 294
Target Start/End: Complemental strand, 30627755 - 30627588
Alignment:
Q  128 agaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaatttta-ttaaaaagtgatgtaataattagttaataaaaagtaacag 226  Q
    |||||||||||| ||||||  || |||||||||||||| | || | | ||||| ||||| ||||||||| ||||||| |||| || ||||||||| ||||    
T  30627755 agaatgttaaccggtgccca-ggtgcattggttaagcacc-aagagaagtaaatttttaattaaaaagtaatgtaatcattactttataaaaagtgacag 30627658  T
Q  227 tttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctc-ggggcactggttaacaa 294  Q
     |||| |||||||||||    ||||| || | |||||||||| ||||| |||  ||||||||||||||||    
T  30627657 gttatatttccaagacataaattctatttatagattccttaatcagtgtctcaagggcactggttaacaa 30627588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 26829492 - 26829580
Alignment:
Q  156 tggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa 244  Q
    |||||||||| |||||||| ||||| ||| || |||||||  |||||| |||| || || ||||||||||  |||| ||||||||||||    
T  26829492 tggttaagcatctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaa 26829580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 15504683 - 15504755
Alignment:
Q  363 gtctcttgctgcgtcaagacaaacatagaatctctaaacttgtgatgctaaatttgaaaa-atgactaaattgac 436  Q
    |||||||| ||| |||||||||||||  || || |||| ||||| ||||||||||||||| ||||||||||||||    
T  15504683 gtctcttgttgcatcaagacaaacat--aaactttaaaattgtggtgctaaatttgaaaatatgactaaattgac 15504755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 39283433 - 39283349
Alignment:
Q  216 aaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgctcggggcactggttaacaagaccctta 302  Q
    |||||||| | ||||| |||| |||||||||||| | |||||| ||||||||||||||   ||| |  |||||||||||||||||||    
T  39283433 aaaagtaatattttatatttcaaagacaatttttatccttttgaattccttaaccagtatccggag--ctggttaacaagaccctta 39283349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 19068228 - 19068195
Alignment:
Q  130 aatgttaaccagtgcccccggagcattggttaag 163  Q
    ||||||||||||||||||||||||| ||||||||    
T  19068228 aatgttaaccagtgcccccggagcactggttaag 19068195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 19116118 - 19116085
Alignment:
Q  130 aatgttaaccagtgcccccggagcattggttaag 163  Q
    ||||||||||||||||||||||||| ||||||||    
T  19116118 aatgttaaccagtgcccccggagcactggttaag 19116085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 20471795 - 20471727
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagt 195  Q
    ||||||||||||||  ||  ||||||||||||||||||| ||||||  | ||||| ||||||||||||||    
T  20471795 ggagaatgttaaccgatgttcccggagcattggttaagc-gctaaataaagtaaatttttattaaaaagt 20471727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 20559742 - 20559810
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagt 195  Q
    ||||||||||||||  ||  ||||||||||||||||||| ||||||  | ||||| ||||||||||||||    
T  20559742 ggagaatgttaaccgatgttcccggagcattggttaagc-gctaaataaagtaaatttttattaaaaagt 20559810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 50468900 - 50468835
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaaga 241  Q
    ||||| |||||||||||||| ||||||| |||| |||||||||| | |||| |||| |||| ||||    
T  50468900 gtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacaggttatatttctaaga 50468835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 125 - 301
Target Start/End: Complemental strand, 50086776 - 50086601
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||| || ||||||||||||||| | |||||||||    
T  50086776 aggagaatgttaaccagtgcccccggggcattggttaagcagctaaaagaggcaagattttattaaaaaatggtgtaataattagttagttaaaagtaac 50086677  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaaccagtgctcggggcactggttaacaagaccctt 301  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||    
T  50086676 agtttatatttccaagacaatttttctacttttggattccttaacctgtgc-cagggcaccggttaacaagaccctt 50086601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 122 - 299
Target Start/End: Original strand, 16072308 - 16072486
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    ||||||| ||||||||| |||||| |||   |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| | ||||||    
T  16072308 aaaaggacaatgttaacaagtgccgccgagacattggttaagcagctaaaagaggtaagattttattaaaaaatgatgtaataattagttagtcaaaagt 16072407  T
Q  222 aacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcggggcactggttaacaagaccc 299  Q
    ||| |||||| ||||||||||||||||||||||||||||||| |||||||||| | | || || |||||||||||||||    
T  16072408 aacggtttatatttccaagacaatttttctacttttggattcgttaaccagtgcccccggacattggttaacaagaccc 16072486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 130 - 274
Target Start/End: Complemental strand, 6480810 - 6480665
Alignment:
Q  130 aatgttaaccagtgcccccggagcattggttaagcagctaaaat-aggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtt 228  Q
    ||||||||||| ||  ||||||| |||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  6480810 aatgttaaccaatgttcccggagtattggttaagcagctaaaaagaggtaagatttaattaaaaagtgatgtaataattagttagtaaaaaataacagtt 6480711  T
Q  229 tatgtttccaagacaatttttctacttttggattccttaaccagtg 274  Q
    ||| ||| ||||| | ||||| || |||||||||| ||||||||||    
T  6480710 tatattttcaagatattttttttagttttggattcattaaccagtg 6480665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 40161177 - 40161028
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    ||||||||||||||| ||||||| ||| ||||| |||||||| ||||| |||||| |||||||||||||||| ||||||||||||  | | |||| ||||    
T  40161177 aggagaatgttaaccggtgcccctgga-cattgattaagcaggtaaaagaggtaagattttattaaaaagtggtgtaataattaggcagtcaaaaataac 40161079  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaaccagtgc 275  Q
     |||||| ||| ||||| ||||||| ||||||| |||||||||||||||||    
T  40161078 ggtttatattttcaagataatttttttacttttagattccttaaccagtgc 40161028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 30116742 - 30116861
Alignment:
Q  152 gcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttct 251  Q
    |||||||||||  || |||| ||||||| ||||||||||||| |||| ||||||||||||||| |||| ||||  ||||| ||||||||||||||||| |    
T  30116742 gcattggttaaatagttaaactaggtaagattttattaaaaaatgatataataattagttaatcaaaaataacgatttatatttccaagacaattttttt 30116841  T
Q  252 acttttggattccttaacca 271  Q
    |||||| ||||| |||||||    
T  30116842 acttttagattcattaacca 30116861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 27655328 - 27655421
Alignment:
Q  180 aattttattaaaaagtgatgtaataattagttaat--aaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaacca 271  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||    
T  27655328 aattttattaaaaagtggtgtaataattagttagtcaaaaaagtaacagtttatatttctaagacaatttttctactttagcattccttaacca 27655421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 49650003 - 49649889
Alignment:
Q  154 attggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctac 253  Q
    ||||||||||||  ||||| || ||| ||||||||||||||| |||||||||||||||| | ||||||||| |||||| ||||||| | ||||||| ||     
T  49650003 attggttaagcaattaaaagagataatattttattaaaaagttatgtaataattagttagtcaaaagtaaccgtttatatttccaacataatttttttat 49649904  T
Q  254 ttttggattccttaa 268  Q
    |||||||||||||||    
T  49649903 ttttggattccttaa 49649889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 41377197 - 41377286
Alignment:
Q  152 gcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaaga 241  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||| |||| ||||    
T  41377197 gcattggttaagtagttaaaagaggtaaaattttattaaaaagtgatgcaataattagttagtcaaaagtaacggtttatatttctaaga 41377286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 42810387 - 42810478
Alignment:
Q  179 aaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaacc 270  Q
    |||||||||| |||||||||||||| |||||||  | |||| ||||||||||| |||| ||||||||||||||||||||| |||| ||||||    
T  42810387 aaattttattgaaaagtgatgtaattattagtttgtcaaaaataacagtttatatttctaagacaatttttctacttttgaattctttaacc 42810478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 50095252 - 50095367
Alignment:
Q  153 cattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttcta 252  Q
    |||||||||||||| ||||| || ||||||||||||||||| |   |||||||||||||| | |||||||| ||||| | ||| ||| ||||||||| ||    
T  50095252 cattggttaagcagttaaaaaagataaaattttattaaaaaatatcgtaataattagttagttaaaagtaatagtttgtattttcaaaacaattttttta 50095351  T
Q  253 cttttggattccttaa 268  Q
    |||||  |||||||||    
T  50095352 cttttaaattccttaa 50095367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 21416205 - 21416282
Alignment:
Q  197 atgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg 274  Q
    |||||||||||||||| | |||||||||  ||||| ||||||| ||||||||||||||||||||||| |||| |||||    
T  21416205 atgtaataattagttagtcaaaagtaaccttttatatttccaatacaatttttctacttttggattctttaatcagtg 21416282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 14815480 - 14815371
Alignment:
Q  153 cattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa-tttttct 251  Q
    |||||||||||||||||||| | |||| ||||||||||||  || ||| ||||||||||  | |||| ||| || |||| ||||||| |||| |||||||    
T  14815480 cattggttaagcagctaaaagaagtaagattttattaaaagctggtgtgataattagttggtcaaaaataaaaggttatatttccaacacaattttttct 14815381  T
Q  252 acttttggat 261  Q
    ||||||||||    
T  14815380 acttttggat 14815371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 21416128 - 21416192
Alignment:
Q  147 ccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagtt 211  Q
    |||||| ||||||||||||  ||||| |||||| ||||||||||||| |||||||||||||||||    
T  21416128 ccggagaattggttaagcatttaaaagaggtaagattttattaaaaaatgatgtaataattagtt 21416192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 31242047 - 31241923
Alignment:
Q  174 aggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca-atttttctacttttggattccttaaccag 272  Q
    ||||||| |||||||||||||| ||||||| |||| |||||||||||| || |||||| ||| ||||||| |   ||||| || | ||||||||||||||    
T  31242047 aggtaaatttttattaaaaagtaatgtaattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctatttatagattccttaaccag 31241948  T
Q  273 t-gctcggggcactggttaacaaga 296  Q
    |  |||||||||  |||||||||||    
T  31241947 tatctcggggcatcggttaacaaga 31241923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 31647690 - 31647808
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||||||||||||| |||||||||  | |||||||||||| | |||| |  |||  |||||||||||||| ||||||| |||| || ||||||||| |    
T  31647690 aaggagaatgttaaccggtgcccccgaggtattggttaagcacc-aaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagtga 31647788  T
Q  224 cagtttatgtttccaagaca 243  Q
     ||||||| |||| ||||||    
T  31647789 tagtttatatttctaagaca 31647808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 38320206 - 38320145
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca 243  Q
    |||||||||||||| ||||||| |||| ||||||| |||| ||||||||| |||||||||||    
T  38320206 ttttattaaaaagtaatgtaattattacttaataagaagtgacagtttatatttccaagaca 38320145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 22280312 - 22280394
Alignment:
Q  128 agaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagtt 211  Q
    |||||||||| |||||||||  | |||||||||||| ||  |||| | |||| |||||||||||| ||| ||||||||||||||    
T  22280312 agaatgttaatcagtgcccctag-gcattggttaagtagacaaaagaagtaagattttattaaaatgtggtgtaataattagtt 22280394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 27284042 - 27284187
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    ||||||||||||| ||| ||||  | ||||||||||| || | ||||||  |||  |||||| |||||||  || ||| |||| || || ||||||||||    
T  27284042 ggagaatgttaacgagtaccccaagggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaaca 27284141  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaacca 271  Q
      |||| ||||||||||||  ||||||  | | |||||||||||||    
T  27284142 tcttatatttccaagacaaaatttctatatgtagattccttaacca 27284187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 41142374 - 41142262
Alignment:
Q  189 aaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgctc--ggggcactg 286  Q
    ||||||| ||||||| |||| ||||| |||||||| |  |||| ||| ||||||||  ||| || |  || |||||||||||| ||| |  |||||||||    
T  41142374 aaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagacaaaatttttattcatgaattccttaaccaatgccccgggggcactg 41142275  T
Q  287 gttaacaagaccc 299  Q
    |||||||||||||    
T  41142274 gttaacaagaccc 41142262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 124 - 299
Target Start/End: Complemental strand, 17900890 - 17900713
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||||||||||||||||||||||||  | ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  17900890 aaggagaatgttaaccagtgcccccgaggtattggttaagcagttaaaagaggtaagattttattaaaaagtggtgtaataattagttagtcaaaagtaa 17900791  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtgct--cggggcactggttaacaagaccc 299  Q
     ||||||| | |||||||||||||||||||||||||||||||||||| ||| |   ||||||||||||||||||||||    
T  17900790 gagtttatatctccaagacaatttttctacttttggattccttaaccggtgtttcaggggcactggttaacaagaccc 17900713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 147 - 299
Target Start/End: Original strand, 11101891 - 11102044
Alignment:
Q  147 ccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatt 246  Q
    ||||||||||||||||||| |||||| |||||| |||||||||||||||  | ||||||||||||| | ||||||||| |||||| |||  |||| ||||    
T  11101891 ccggagcattggttaagcaactaaaagaggtaagattttattaaaaagtagtttaataattagttagtcaaaagtaactgtttatatttttaagataatt 11101990  T
Q  247 tttctacttttggattccttaaccagtg-ctcggggcactggttaacaagaccc 299  Q
    |||||||||||||||||||||||||||| | | ||||| |||||||||||||||    
T  11101991 tttctacttttggattccttaaccagtgtccctgggcattggttaacaagaccc 11102044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 127 - 302
Target Start/End: Complemental strand, 22297719 - 22297543
Alignment:
Q  127 gagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacag 226  Q
    ||||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||  | |||||||||      
T  22297719 gagaatgttaaccagtgcctctggggcattggttaagcagctaaaagaagtaaaattttatt-aaaagtggtgtaataattagtttgtcaaaagtaacga 22297621  T
Q  227 tttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctc-ggggcactggttaacaagaccctta 302  Q
    ||||| ||| ||||||||||||||||||| || |||| |||||||||| ||| |||| || |||||||||||||||||    
T  22297620 tttatattttcaagacaatttttctacttctgaattctttaaccagtgcctcaggggtaccggttaacaagaccctta 22297543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 19418593 - 19418712
Alignment:
Q  154 attggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctac 253  Q
    |||||||||||| | |||| | |||| ||||||||||||||||||||||||||||| |  | |||||||||||||||| |||  |||||||||||| |||    
T  19418593 attggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataattagctggtcaaaagtaacagtttatatttttaagacaatttttttac 19418692  T
Q  254 ttttggattccttaaccagt 273  Q
    ||||||||||||||||||||    
T  19418693 ttttggattccttaaccagt 19418712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 124 - 296
Target Start/End: Complemental strand, 26609051 - 26608878
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||| |||||||||  ||||  || ||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||| || | ||||||||    
T  26609051 aaggacaatgttaacatgtgcttccagagcattggttaagcagttaaaagagataagattttattaaaaagtgatgtaataattagctagtcaaaagtaa 26608952  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtg--ctcggggcactggttaacaaga 296  Q
    |||||||| ||| |||||||| |||| || |||| |||||||||||  |||  | ||| ||||||||||||||||    
T  26608951 cagtttatattttcaagacaactttt-tatttttagattccttaacttgtgtccccggagcactggttaacaaga 26608878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 128 - 262
Target Start/End: Original strand, 10252938 - 10253072
Alignment:
Q  128 agaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagt 227  Q
    |||||||||||| ||| | |||  | |||||||||||| | |||| | |||| ||||||||||||| |||||||||||||||||| | |||| |||||||    
T  10252938 agaatgttaaccggtgtctccgaggtattggttaagcaaccaaaagaagtaagattttattaaaaaatgatgtaataattagttagtcaaaaataacagt 10253037  T
Q  228 ttatgtttccaagacaatttttctacttttggatt 262  Q
    |||| ||| ||||||| ||||||||||||| ||||    
T  10253038 ttatattttcaagacagtttttctacttttagatt 10253072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 31577876 - 31578001
Alignment:
Q  150 gagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaattttt 249  Q
    |||||||| ||||| || ||||| |  ||| |||||||| ||||| | ||| ||||||||||  |||||||||||| ||||| |||  || | | |||||    
T  31577876 gagcattgcttaagtagttaaaagaattaatattttatttaaaagcggtgtgataattagttggtaaaaagtaacaatttatatttataatatagttttt 31577975  T
Q  250 ctacttttggattccttaaccagtgc 275  Q
     ||||||| |||||||||||||||||    
T  31577976 ttacttttagattccttaaccagtgc 31578001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 302
Target Start/End: Original strand, 10008190 - 10008340
Alignment:
Q  153 cattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttcta 252  Q
    ||||||||||||| | |||| | ||||  ||||||||||||||| |||||| |||| || || ||||||||| |||||| |||  |||||||  |||||     
T  10008190 cattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttct- 10008288  T
Q  253 cttttggattccttaaccagtgctc--ggggcactggttaacaagaccctta 302  Q
     |||| |||||||||| ||||| ||   || ||||||||| |||||||||||    
T  10008289 tttttagattccttaatcagtgttcaaaggacactggttagcaagaccctta 10008340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 1970964 - 1970905
Alignment:
Q  152 gcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagtt 211  Q
    ||||||||||||||| ||||| | ||||||||||||||||||  | ||||||||||||||    
T  1970964 gcattggttaagcaggtaaaagaagtaaaattttattaaaaaaaggtgtaataattagtt 1970905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 17506292 - 17506349
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaa 239  Q
    |||||||||||||| ||||||| |||| || ||||||||| ||||||||| |||||||    
T  17506292 ttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttccaa 17506349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 21809948 - 21809802
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    ||||||| |||||| |||  || |||||||||||||||| ||||||  |  |||  |||||||||||||| | ||||| |||| || ||||||||| |||    
T  21809948 ggagaattttaaccggtgttcctggagcattggttaagc-gctaaataaaataagtttttattaaaaagtaacgtaattattacttgataaaaagtgaca 21809850  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaaccagt 273  Q
     ||||| |||| |||||||   ||||| || | |||| ||||||||||    
T  21809849 atttatatttctaagacaacaattctatttatagatttcttaaccagt 21809802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 29403646 - 29403599
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||| |||||||||||||||| ||||||||||| ||| ||||||||||    
T  29403646 gtaatattttattaaaaagtggtgtaataattaattactaaaaagtaa 29403599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 6770867 - 6770982
Alignment:
Q  189 aaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg--ctcggggcactg 286  Q
    ||||||| ||||||| |||| ||||| |||||| | | ||||| ||| ||||| || ||||||| || | | ||||||||||| ||  ||  ||||||||    
T  6770867 aaaaagttatgtaattattatttaatcaaaagtcaaaatttatattttcaagataaattttctatttatagtttccttaaccaatgccctaagggcactg 6770966  T
Q  287 gttaacaagaccctta 302  Q
    |||| |||||||||||    
T  6770967 gttagcaagaccctta 6770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 19777887 - 19778058
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||||||||||||||||||| || || | |||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||    
T  19777887 aaggagaatgttaaccagtgctccagg-gtattgattaagcagctaaaagaggtaagattttattaaagagtgatgtaataattagttaataaaaaataa 19777985  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtgct-cggggcactggttaacaag 295  Q
    |||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  19777986 cagtttatattttcaagataatttttctacttttggattccttaaccagtgctccggagcactgattaacaag 19778058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 125 - 270
Target Start/End: Complemental strand, 26203162 - 26203018
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| | |||||| ||    
T  26203162 aggagaatgttaaccagtgcccccgg-gcattggttaagcaactaaaagaggtaaaattttattaaaaagtggtgtaataattagttagtcaaaagtgac 26203064  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaacc 270  Q
     | |||  ||||||||||||||||||||||||||||||||||||||    
T  26203063 tggttagatttccaagacaatttttctacttttggattccttaacc 26203018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 7833891 - 7833714
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    ||||||||||||||||||| ||||||  | |||||||||||||||| |||| | |||| |||||||||||||||  || |||||||||||  | |||| |    
T  7833891 aaaaggagaatgttaaccaatgccccgagggcattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataattagttggtcaaaaat 7833792  T
Q  222 aacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg--ctcggggcactggttaacaagac 297  Q
    |||||||||| ||| |||||||||||||||||||| ||||||| |||| ||||  |  ||||||||| ||||||||||    
T  7833791 aacagtttatattttcaagacaatttttctactttgggattccataactagtgtcccgggggcactgattaacaagac 7833714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 1703980 - 1703841
Alignment:
Q  163 gcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggatt 262  Q
    |||||||||| |||||| |||||||||||||||  ||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||| |||    
T  1703980 gcagctaaaagaggtaagattttattaaaaagttgtgtaataattagttagtcaaaagtaacagtttatatttccgagacaatttttctacttttgaatt 1703881  T
Q  263 ccttaaccagtg--ctcggggcactggttaacaagaccct 300  Q
    |||| |||| ||  | || | |||||||||||||||||||    
T  1703880 ccttgaccaatgcccccgagacactggttaacaagaccct 1703841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 156 - 277
Target Start/End: Complemental strand, 11740474 - 11740353
Alignment:
Q  156 tggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctactt 255  Q
    |||||||||||  |||| | ||||||||||||||||||||| |||||||||||||| || |||||||||||||||| ||| |||||||||||||||| |     
T  11740474 tggttaagcaggcaaaagaagtaaaattttattaaaaagtggtgtaataattagttgatcaaaagtaacagtttatattttcaagacaatttttctatta 11740375  T
Q  256 ttggattccttaaccagtgctc 277  Q
    || |||||||||| ||||||||    
T  11740374 ttagattccttaatcagtgctc 11740353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 48984345 - 48984492
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    |||||||||||||| ||| ||| || | ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||| | |||||||||     
T  48984345 ggagaatgttaaccggtgtccctggggaattggttaagcagttaaaagaggtaagattttattaaaaagtggtgtaataattagttagt-aaaagtaacc 48984443  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaaccagtg 274  Q
    ||| |||||| ||| | ||||||||| |||||  ||| |||||| ||||    
T  48984444 gttaatgttttcaaaataatttttcttcttttaaatttcttaactagtg 48984492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 41434671 - 41434788
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    |||||||||||||||||||  || ||||||||||||||||| || ||||||   ||||| |||||||||||| | ||||||| |||| || |||||||||    
T  41434671 aaaaggagaatgttaaccaaggctcccggagcattggttaaaca-ctaaaa---gtaaatttttattaaaaaataatgtaattattatttgataaaaagt 41434766  T
Q  222 aacagtttatgtttccaagaca 243  Q
     ||||||||| |||| ||||||    
T  41434767 gacagtttatatttctaagaca 41434788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 243
Target Start/End: Complemental strand, 8117587 - 8117470
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    ||||||||||||| ||||| |||||| ||||||||||| | ||||||  | ||||  |||||||||||||| ||||||| |||| |||||||||| ||||    
T  8117587 aggagaatgttaatcagtgaccccggggcattggttaaac-gctaaatgaagtaagtttttattaaaaagtaatgtaattattatttaataaaaaataac 8117489  T
Q  225 agtttatgtttccaagaca 243  Q
    | ||||| ||| |||||||    
T  8117488 aatttatattttcaagaca 8117470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 45907178 - 45907001
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||||||||||||||||| ||||||   ||||||||||||   |||| | ||||  |||||||||||||| ||||||| |||| || ||||||||| |    
T  45907178 aaggagaatgttaaccagtgtccccgggatattggttaagcata-aaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtga 45907080  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtgctcggggcactggttaacaagaccctta 302  Q
    |||||||| ||| ||||||||    |||| || | |||||||||||| |||| | ||||  | ||| ||||||||||||    
T  45907079 cagtttatatttacaagacaaaaaatctatttatagattccttaacccgtgccccgggccatagtttacaagaccctta 45907001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 11736207 - 11736099
Alignment:
Q  198 tgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgc-tcgggg---cactggttaaca 293  Q
    ||||||||||||||  | ||||||||| |||||| |||| |||| |||||||||||||||  ||||||||| || ||| ||||||   |||| |||||||    
T  11736207 tgtaataattagttggtcaaaagtaacggtttatatttctaagataatttttctacttttaaattccttaatcattgcttcggggacacactcgttaaca 11736108  T
Q  294 agaccctta 302  Q
    |||||||||    
T  11736107 agaccctta 11736099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 11736281 - 11736224
Alignment:
Q  154 attggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagtt 211  Q
    |||||||||||||| |||| | |||| |||||||||||||||| ||||||||||||||    
T  11736281 attggttaagcagccaaaagaagtaagattttattaaaaagtggtgtaataattagtt 11736224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 16861703 - 16861764
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca 243  Q
    |||||||||||||| ||||||| | || |||||||||| | ||||||||| |||||||||||    
T  16861703 ttttattaaaaagtaatgtaattaatatttaataaaaaatgacagtttatatttccaagaca 16861764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 22035758 - 22035819
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca 243  Q
    |||||||||||| | ||||||| |||| ||| |||||||| ||||||||| |||||||||||    
T  22035758 ttttattaaaaaataatgtaattattacttattaaaaagtgacagtttatatttccaagaca 22035819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 3624317 - 3624254
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaa 239  Q
    |||| |||||||||||||||| ||||||||||| || ||||||| ||| || |||| |||||||    
T  3624317 gtaagattttattaaaaagtggtgtaataattatttgataaaaaataaaagcttatatttccaa 3624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 33194720 - 33194810
Alignment:
Q  154 attggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa 244  Q
    |||||||||||| |||||||| ||||| ||||| ||||||||  |||||| |||| ||||| ||| || | ||||||| |||  |||||||    
T  33194720 attggttaagcaactaaaataagtaaatttttaataaaaagtagtgtaatcattacttaatcaaatgtgatagtttatatttttaagacaa 33194810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 24937802 - 24937976
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    |||||||||||| | |||||| | | |||||||||||| | | |||||| ||||  ||||| ||||||||| |||||| |||| ||||| |||||| | |    
T  24937802 ggagaatgttaaacggtgccctcagggcattggttaaggaaccaaaataagtaacttttta-taaaaagtggtgtaattattacttaattaaaagtcaaa 24937900  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaaccagtg--ctcggggcactggttaacaagaccc 299  Q
     | ||| |||  || |||| ||||||| || | | ||||||||||| ||  ||  |||||||||||| ||||||||    
T  24937901 atctatatttttaaaacaaattttctatttatagtttccttaaccattgccctgagggcactggttagcaagaccc 24937976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 122 - 299
Target Start/End: Original strand, 29458000 - 29458179
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    |||| |||||| |||||||||||||   | |||||| |||||||||||||| || ||| |||||||||||||||| ||||||||||||||| | |||| |    
T  29458000 aaaaagagaatattaaccagtgccctgagggcattgattaagcagctaaaagagataatattttattaaaaagtggtgtaataattagttagtcaaaaat 29458099  T
Q  222 aacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgc--tcggggcactggttaacaagaccc 299  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||   ||||||||| |||||||||||||    
T  29458100 aacagtttatatttccaagacaatttttctacttttagattccttaaccagtgcctccggggcactagttaacaagaccc 29458179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 124 - 268
Target Start/End: Original strand, 20585773 - 20585917
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||||||||||||||||||||||  | ||||| |||||| | |||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  20585773 aaggagaatgttaaccagtgcccctagggcattcgttaagtaactaaaagaggtaagattttattaaaaagtggtgtaataattagttaatcaaaagtaa 20585872  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaa 268  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||    
T  20585873 cagtttatatttccaaaacaatttttctacttttgaattccttaa 20585917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 125 - 270
Target Start/End: Complemental strand, 26835841 - 26835696
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||| ||| |||||| |||  ||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  26835841 aggacaatattaacccgtgttcccggcgcattggttaagcagctaaaagagttaaaattttattaaaaagtgatataataattagttaatcaaaagtaac 26835742  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaacc 270  Q
    | ||||| ||| |||||||||||||||||||||| |||||||||||    
T  26835741 aatttatattttcaagacaatttttctacttttgaattccttaacc 26835696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 126 - 302
Target Start/End: Complemental strand, 44291372 - 44291196
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||| | ||||   ||||||||||||| ||||||| |||| |||||||||||| |||    
T  44291372 ggagaatgttaaccagtgcccccggggcattggttaagcacc-aaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgaca 44291274  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcggggcactggttaacaagaccctta 302  Q
    |||||| |||||||||||    ||||| || | |||||||||||||||| | ||||||||||||||||||||||||||    
T  44291273 gtttatatttccaagacagaaattctatttatagattccttaaccagtgccccggggcactggttaacaagaccctta 44291196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 124 - 298
Target Start/End: Complemental strand, 49452751 - 49452577
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||| |||||||| ||||| ||||| |||||||||||||||| ||||| |||||| | ||||||||||| |||||||||||||||||| | |||| |||    
T  49452751 aaggacaatgttaatcagtgtccccgaagcattggttaagcagttaaaagaggtaagaatttattaaaaaatgatgtaataattagttagtcaaaa-taa 49452653  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcggggcactggttaacaagacc 298  Q
    |||||||| ||| ||| ||||||||||||| ||| ||||| ||||||| || | |||| |||||||||||||||||    
T  49452652 cagtttatattttcaaaacaatttttctacatttagattctttaaccaatgccccgggacactggttaacaagacc 49452577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 32961150 - 32961247
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagta 222  Q
    ||||||||||||||  |||||||| || ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||||    
T  32961150 aaggagaatgttaattagtgccccggg-gcattggttaagcagctaaaagaggtaagattttattaaaaagtggtgtaataattagttagtaaaaagta 32961247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 45054379 - 45054500
Alignment:
Q  148 cggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaattt 247  Q
    ||||||||||||||| ||| ||||| | |||| ||||||||||||| |  ||||||||||||||| | |||||||||||||||| |||| || |||||||    
T  45054379 cggagcattggttaaacagttaaaagaagtaagattttattaaaaaatagtgtaataattagttagtcaaaagtaacagtttatatttctaacacaattt 45054478  T
Q  248 ttctacttttggattccttaac 269  Q
    ||||||||||| ||| ||||||    
T  45054479 ttctacttttgaatttcttaac 45054500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 14622091 - 14622238
Alignment:
Q  153 cattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttcta 252  Q
    |||| |||||| |||||||| | |||| |||||||| ||||||| ||| | ||||||||  | |||||||||| ||||| ||| ||| ||||||||||||    
T  14622091 cattagttaagtagctaaaagaagtaatattttattgaaaagtggtgtgaaaattagttggtcaaaagtaacaatttatattttcaatacaatttttcta 14622190  T
Q  253 cttttggattccttaaccagtgct--cggggcactggttaacaagacc 298  Q
     ||||||||||||||||| |||||   | ||||| |||||||||||||    
T  14622191 tttttggattccttaacccgtgcttcagaggcaccggttaacaagacc 14622238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 126 - 277
Target Start/End: Original strand, 35483565 - 35483716
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    |||||||||||||| ||||| | || ||||||||||| |||| | ||    ||| ||||||||||| ||||  ||||||||||||| || |||||||| |    
T  35483565 ggagaatgttaaccggtgcctctggggcattggttaaacagccagaagtaataagattttattaaagagtggagtaataattagttgatcaaaagtaaaa 35483664  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaaccagtgctc 277  Q
    |||||| |||  |||||| |||||||||||||| ||||||||| || |||||    
T  35483665 gtttatatttgtaagacagtttttctacttttgaattccttaatcaatgctc 35483716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 30863747 - 30863626
Alignment:
Q  150 gagcattggttaagcagctaaaatag--gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaattt 247  Q
    ||||||||||||||||  ||||| ||  |||| |||||||| ||||||| |||||||||| |||| | |||| ||||| ||||| |||  ||||||||||    
T  30863747 gagcattggttaagcaattaaaaaagttgtaagattttattgaaaagtggtgtaataatttgttagttaaaaataacaatttatattttgaagacaattt 30863648  T
Q  248 ttctacttttggattccttaac 269  Q
    ||||||||||| ||||||||||    
T  30863647 ttctacttttgaattccttaac 30863626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 32961504 - 32961582
Alignment:
Q  219 agtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgctcggggcactggttaacaagac 297  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||   ||||||| |||||||||||    
T  32961504 agtaacagtttatatttccaagataatttttctacttttggattccttaacccgtgcctagggcactagttaacaagac 32961582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 43862909 - 43863028
Alignment:
Q  123 aaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagta 222  Q
    ||||||||||||||||| ||||||| || |||||||||||||  | |||  | ||||  |||||||||||||| ||||||| |||| |||||||| |||     
T  43862909 aaaggagaatgttaaccggtgcccctggggcattggttaagcccc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtg 43863007  T
Q  223 acagtttatgtttccaagaca 243  Q
    ||||||||| |||||||||||    
T  43863008 acagtttatatttccaagaca 43863028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 15671261 - 15671111
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||||||||||||||||| |   |||||||||||||||| | | |||  | ||||  |||||||||||||| ||||||| |||| || ||||||||| |    
T  15671261 aaggagaatgttaaccagtacatacggagcattggttaagaacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtga 15671163  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtgc 275  Q
    |||||||| |||| |||||||   || || || | |||||||||||||||||    
T  15671162 cagtttatatttcgaagacaaaaattttatttatagattccttaaccagtgc 15671111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 42163752 - 42163633
Alignment:
Q  123 aaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagta 222  Q
    ||||| ||||||||||| ||||| |||| ||||||||||  || | |||  | ||||  |||||||||||||| ||||||| |||| ||||||||||||     
T  42163752 aaaggggaatgttaaccggtgcctccggggcattggttacacacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 42163654  T
Q  223 acagtttatgtttccaagaca 243  Q
    || |||||| |||||||||||    
T  42163653 acggtttatatttccaagaca 42163633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 17109628 - 17109563
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaaga 241  Q
    ||||| |||||||||||||| ||||||| |||| ||||||||| || ||||||||| |||||||||    
T  17109628 gtaaatttttattaaaaagttatgtaattattacttaataaaatgttacagtttatatttccaaga 17109563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 32720664 - 32720549
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||||||||||| ||||||||  |||| |||||||||||| ||||| || ||||  |||||||||||| | || |||| |||| |||||||| ||| |    
T  32720664 aaggagaatgttaatcagtgccct-ggagtattggttaagca-ctaaattaagtaagtttttattaaaaaataatataattattacttaataaatagtga 32720567  T
Q  224 cagtttatgtttccaaga 241  Q
    |||||||| ||| |||||    
T  32720566 cagtttatattttcaaga 32720549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 49419141 - 49419085
Alignment:
Q  180 aattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttc 236  Q
    |||||||||||||||| ||||||| ||||||||||||||||| ||| ||||| ||||    
T  49419141 aattttattaaaaagttatgtaattattagttaataaaaagtgacaatttatatttc 49419085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 301
Target Start/End: Complemental strand, 42437857 - 42437682
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    |||||||| |||||||||||||  | |||||||||||||| | |||| | | |||||||||| ||||||| ||||||| ||||    || ||||||||||    
T  42437857 ggagaatgctaaccagtgccccaagggcattggttaagcatccaaaacacgcaaaattttatgaaaaagttatgtaatcatta--cgatcaaaagtaaca 42437760  T
Q  226 gtttatgtttccaagacaatttttctacttttggattccttaaccagtg--ctcggggcactggttaacaagaccctt 301  Q
      ||||  |||||||| ||  |||||| || | || |||||||||| ||  ||  |||||||||||| ||||||||||    
T  42437759 tcttataattccaagataaaatttctatttgtagaatccttaaccattgccctgagggcactggttatcaagaccctt 42437682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 44041409 - 44041351
Alignment:
Q  185 tattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca 243  Q
    ||||||||||| ||||||| |||| |||||||||||| ||||||||| || ||||||||    
T  44041409 tattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattaccaagaca 44041351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 27144025 - 27144145
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagaca-atttttctacttttggattccttaaccagtg-ctcg- 278  Q
    |||||||||||| | ||||||| |||| |||||||||||| ||||||||| |||| || ||| |   ||||| || | |||| ||||||||||| ||||     
T  27144025 ttttattaaaaaataatgtaattattacttaataaaaagtcacagtttatatttctaatacagaaaattctatttatagatttcttaaccagtgcctcga 27144124  T
Q  279 gggcactggttaacaagaccc 299  Q
    |||||| ||||||||||||||    
T  27144125 gggcaccggttaacaagaccc 27144145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 36436552 - 36436671
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||||||||||| | ||||| |  | |||| |||||| || ||||||||  ||| |||||||||||||||  || |||||||| || || |||| |||    
T  36436552 aaggagaatgttaaaccgtgcctcatgggcatgggttaaacatctaaaataaataagattttattaaaaagtagtgcaataattatttgatcaaaaataa 36436651  T
Q  224 cagtttatgtttccaagaca 243  Q
     ||||||| ||| |||||||    
T  36436652 aagtttatatttacaagaca 36436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 35322035 - 35322096
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa 244  Q
    |||||||||||||| ||||||| |||| |||||||||||| | ||||||| |||| |||||||    
T  35322035 ttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttatatttctaagacaa 35322096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 4020140 - 4020213
Alignment:
Q  198 tgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaacca 271  Q
    ||||||||||| ||||| |||| ||||| ||||| ||| ||||||||  |||||| || | |||||||||||||    
T  4020140 tgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctatttgtagattccttaacca 4020213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 34681229 - 34681201
Alignment:
Q  134 ttaaccagtgcccccggagcattggttaa 162  Q
    |||||||||||||||||||||||||||||    
T  34681229 ttaaccagtgcccccggagcattggttaa 34681201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 122 - 253
Target Start/End: Complemental strand, 22266368 - 22266239
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    ||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||||||  |||||||||||||| ||||||||    
T  22266368 aaaaggagaatgttaaccagtgcccccggggcattgcttaagcagttaaaagaggtaagattttattaaaaagtg--gtaataattagttagtaaaaagt 22266271  T
Q  222 aacagtttatgtttccaagacaatttttctac 253  Q
    |||||||||||||| |||||||||||||||||    
T  22266270 aacagtttatgttttcaagacaatttttctac 22266239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 38388490 - 38388634
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggag-cattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagta 222  Q
    ||||| ||||||||||||||||| ||| | ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||    
T  38388490 aaggacaatgttaaccagtgccctcgggggcatcggttaagcagctaaaagaggtaagattttattaaaaagtgatgtaataattagttagtcaaaagta 38388589  T
Q  223 acagtttatgtttccaagacaatttttctacttttggattcctta 267  Q
    | ||||||| ||||||||| ||||||||| |||||||||| ||||    
T  38388590 atagtttatatttccaagataatttttctccttttggatttctta 38388634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 24757187 - 24757057
Alignment:
Q  127 gagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacag 226  Q
    ||||||||||| |||||||   ||| |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  24757187 gagaatgttaatcagtgcc---ggaacattggttaagcagctaaaagagataagattttattaaaaagtgatgtaataattagttagtcaaaagtaacag 24757091  T
Q  227 tttatgtttccaagacaatttttctacttttgga 260  Q
    ||||| ||| |||| |||||||||||||||||||    
T  24757090 tttatattttcaagtcaatttttctacttttgga 24757057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 1988776 - 1988893
Alignment:
Q  152 gcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttct 251  Q
    |||||| ||||| || ||||| |||||| | ||||||||||||| |||||||||||||||| | |||||||||||||||| |||| ||||||||||||||    
T  1988776 gcattgattaaggagttaaaagaggtaagaatttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttcgaagacaatttttct 1988875  T
Q  252 acttttggattccttaac 269  Q
    ||||||||||||||||||    
T  1988876 acttttggattccttaac 1988893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 155 - 296
Target Start/End: Original strand, 34832274 - 34832417
Alignment:
Q  155 ttggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctact 254  Q
    ||||||||||| | |||| || ||||| |||||||||||||| ||||||||||||||| | |||||||||| ||||| ||||||| | ||||||||||||    
T  34832274 ttggttaagcaacgaaaagagttaaaaatttattaaaaagtggtgtaataattagttagtcaaaagtaacaatttatatttccaaaataatttttctact 34832373  T
Q  255 tttggattccttaaccagtg--ctcggggcactggttaacaaga 296  Q
    ||| ||||| |||| |||||  |||| |||||||||||||||||    
T  34832374 tttagattctttaatcagtgttctcgaggcactggttaacaaga 34832417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 124 - 268
Target Start/End: Original strand, 1551464 - 1551607
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||| |||||||||| || ||| || |||||| ||||||||  |||| |||||| |||||||||||||||| ||| ||||||||||  | ||||||||    
T  1551464 aaggaggatgttaaccaatgtcccggg-gcattgattaagcagtcaaaagaggtaagattttattaaaaagtggtgtcataattagttggtcaaaagtaa 1551562  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaa 268  Q
    || ||||| |||  |||||||||||||||||||||||||||||||    
T  1551563 cactttatatttaaaagacaatttttctacttttggattccttaa 1551607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 35762292 - 35762408
Alignment:
Q  158 gttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctactttt 257  Q
    ||||||||| ||||| ||| ||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||| ||| |||     |||||||| ||||    
T  35762292 gttaagcagttaaaagaggcaaaattttattaaaaagtggtgtaataattaattaatcaaaa-taacagtttatattttcaaatttttttttctattttt 35762390  T
Q  258 ggattccttaaccagtgc 275  Q
    ||||||||||| ||||||    
T  35762391 ggattccttaatcagtgc 35762408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 37919368 - 37919487
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||||||| |||||| ||||| ||||||||||||||||||| | || | || |||| |||||||||||||| ||||||| |||| |||||||||| | |    
T  37919368 aaggagaatattaaccggtgcctccggagcattggttaagcaccgaataaag-taaatttttattaaaaagtaatgtaattattacttaataaaaaatga 37919466  T
Q  224 cagtttatgtttccaagacaa 244  Q
    |||||||| ||| ||| ||||    
T  37919467 cagtttatattttcaaaacaa 37919487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 13904105 - 13904004
Alignment:
Q  199 gtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcggggcactggttaacaagac 297  Q
    |||||||||||||  | |||| ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||| | |||||||| ||||||||| ||    
T  13904105 gtaataattagttggtcaaaaataacagtttatattttcaagacaattttt-ttcttttggattccttaaccagtgccccggggcaccggttaacaaaac 13904007  T
Q  298 cct 300  Q
    |||    
T  13904006 cct 13904004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 9791953 - 9791862
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaa 268  Q
    |||| |||||||||||||||||| |||||||||||| || |||| || |||||||| ||| ||||||||||||| || | |||||||||||||    
T  9791953 gtaagattttattaaaaagtgatataataattagttgatcaaaaatagcagtttatattttcaagacaattttt-tattcttggattccttaa 9791862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 37564779 - 37564869
Alignment:
Q  185 tattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgc 275  Q
    |||||||||||| ||||||||||| ||  | ||||||||| |  ||| |||| |||| ||||||||||||||| |||||||||||||||||    
T  37564779 tattaaaaagtggtgtaataattaattggtcaaaagtaaccgcatatatttcaaagataatttttctacttttagattccttaaccagtgc 37564869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 39065676 - 39065572
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    |||||||| |||| |||||| | ||||||||||||||||| |||||| | ||||| |||||||||||| | |||| || |||| || ||||||||| |||    
T  39065676 ggagaatgctaactagtgcctctggagcattggttaagca-ctaaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgaca 39065578  T
Q  226 gtttat 231  Q
    ||||||    
T  39065577 gtttat 39065572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 271
Target Start/End: Original strand, 41726865 - 41727011
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    ||||||||| |||| |||||||   | ||| |||||||||| |||||||| ||||  |||||| |||||   ||||||| |||| || ||||||| ||||    
T  41726865 aggagaatgataactagtgccctaagggcaatggttaagcatctaaaataagtaagtttttatgaaaaaactatgtaatcattactttataaaaaataac 41726964  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaacca 271  Q
    | ||||| ||||||||||||  ||| || || | |||||||||||||    
T  41726965 attttatatttccaagacaaaatttttatttgtagattccttaacca 41727011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 299
Target Start/End: Complemental strand, 39534275 - 39534107
Alignment:
Q  131 atgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagttta 230  Q
    |||||||||||||||||| | || || |||||||| | |||  ||||||| |||||||||||||| ||||||| |||| || |||||  || ||||||||    
T  39534275 atgttaaccagtgcccccagggcgttagttaagcacc-aaatgaggtaaatttttattaaaaagtaatgtaattattacttgataaagggtgacagttta 39534177  T
Q  231 tgtttccaagacaatttttctacttttggattccttaaccagtgctc-ggggcactggttaacaagaccc 299  Q
    | ||| |||||||    ||||| || | ||||| ||||||  ||| | ||||||| ||||||||||||||    
T  39534176 tattttcaagacagaaattctaattatagattctttaacccatgcccgggggcaccggttaacaagaccc 39534107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 20821916 - 20821978
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa 244  Q
    |||||||||||||| ||||||| |||| |||||||||||| ||| ||||| |||  |||||||    
T  20821916 ttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagacaa 20821978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 28462623 - 28462569
Alignment:
Q  190 aaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa 244  Q
    |||||| ||||||| |||| |||||||||||| | ||||||| ||||||||||||    
T  28462623 aaaagtaatgtaattattacttaataaaaagtgatagtttatatttccaagacaa 28462569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 485
Target Start/End: Original strand, 11475475 - 11475539
Alignment:
Q  421 aaatgactaaattgacggacattgttcacgttaagggactaaatagcaattttgtaactttgagg 485  Q
    |||| ||||||||||| |||||||||||  |||||| |||||||  | ||||||||| |||||||    
T  11475475 aaattactaaattgacagacattgttcaacttaaggaactaaatttctattttgtaaatttgagg 11475539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 14110706 - 14110639
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa 244  Q
    ||||| |||||||||||||| ||||||| |||| || ||||||||| || |||||| |||| |||||||    
T  14110706 gtaaatttttattaaaaagttatgtaattattactt-ataaaaagtgacggtttatatttctaagacaa 14110639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 35467792 - 35467832
Alignment:
Q  262 tccttaaccagtgctcggggcactggttaacaagaccctta 302  Q
    |||||||||||||| |||||||||||||||||  |||||||    
T  35467792 tccttaaccagtgcccggggcactggttaacattaccctta 35467832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 38362344 - 38362265
Alignment:
Q  128 agaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataatta 208  Q
    |||||||||||| |||||||||  |||||||||||||| | |||  | ||||| |||||||||||||  ||||||| ||||    
T  38362344 agaatgttaaccggtgcccccgatgcattggttaagcatc-aaataaagtaaatttttattaaaaagcaatgtaattatta 38362265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 9e-41; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 125 - 293
Target Start/End: Original strand, 35501370 - 35501538
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    ||||||||||||| || |||| |||| ||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||| | |||| |||     
T  35501370 aggagaatgttaatca-tgcctccggggcattggttaagcaggtaaaagaagtaagattttattaaaaagtgatgtaataattagttagtcaaaaataaa 35501468  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaaccagtgct-cggggcactggttaaca 293  Q
    ||||||| |||||||  ||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||    
T  35501469 agtttatatttccaaatcaatttttctacttttggaatccttaaccagtgctccggagcaccggttaaca 35501538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 125 - 295
Target Start/End: Complemental strand, 19995062 - 19994891
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||| |||||||||| |||  ||||| |||| |||||||||| ||||| ||||||   |||||||||||||||||||||||||||||| | |||||||||    
T  19995062 aggacaatgttaaccggtgttcccggggcatcggttaagcagttaaaagaggtaagcatttattaaaaagtgatgtaataattagttagtcaaaagtaac 19994963  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcggggcactggttaacaag 295  Q
    ||||||| ||||||||| |||||||||| |||||||||| |||||||||| | ||||||||| ||| |||||    
T  19994962 agtttatatttccaagataatttttctatttttggattctttaaccagtgccccggggcactagttcacaag 19994891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 19606387 - 19606241
Alignment:
Q  153 cattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttcta 252  Q
    ||||||||||| |||||| | | |||| |||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||| | | ||||||||    
T  19606387 cattggttaagaagctaagagatgtaagattttattaaaaagtggtgtaataattagttcatcaaaagtaacagtttatatttccaaaatagtttttcta 19606288  T
Q  253 cttttggattccttaaccagtgctcggggcactggttaacaagaccc 299  Q
    ||||||||||  ||||||||||| |||||||||  ||||||||||||    
T  19606287 cttttggattttttaaccagtgcccggggcacttattaacaagaccc 19606241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 122 - 275
Target Start/End: Original strand, 43248667 - 43248820
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    ||||||| |||||||||| |||| || ||| ||||||||| |||| ||||| | |||| ||||||| ||||| || ||||||||||||||  | ||||||    
T  43248667 aaaaggacaatgttaaccggtgctcctggaacattggttacgcagataaaagaagtaagattttatcaaaaattggtgtaataattagttggtcaaaagt 43248766  T
Q  222 aacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgc 275  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  43248767 aacagtttatatttctaagacaatttttctacttttggattccttaacctgtgc 43248820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 41385006 - 41385152
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    ||||||| |||||||||| ||| ||||| |||||||||||||||||||||| | |||| |||||||| ||||||| ||| ||||||||||  | ||||||    
T  41385006 aaaaggacaatgttaaccggtgaccccg-agcattggttaagcagctaaaagaagtaatattttattgaaaagtggtgtgataattagttggtcaaaagt 41385104  T
Q  222 aacagtttatgtttccaagacaatttttctacttttggattccttaac 269  Q
    |||| ||||| ||||||| |||||||||||| ||||||||||||||||    
T  41385105 aacaatttatatttccaatacaatttttctatttttggattccttaac 41385152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 16498252 - 16498137
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    ||||| |||||||||||||||| || | ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| | |||| |||    
T  16498252 aaggacaatgttaaccagtgccaccagggcattggttaagcagttaaaagaggtaagattttattaaaaagtgatgtaataattagttagtcaaaattaa 16498153  T
Q  224 cagtttatgtttccaa 239  Q
    || ||||| |||||||    
T  16498152 caatttatatttccaa 16498137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 36622101 - 36622225
Alignment:
Q  154 attggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctac 253  Q
    |||||||||| | |||||| |||||| |||||||||||||||  ||||||||||||||| | |||||||| ||||||| |||| ||||||||||||||||    
T  36622101 attggttaagtaactaaaagaggtaagattttattaaaaagttgtgtaataattagttagtcaaaagtaatagtttatatttctaagacaatttttctac 36622200  T
Q  254 -ttttggattccttaaccagtgctc 277  Q
     ||||  |||||||||||| |||||    
T  36622201 tttttttattccttaaccaatgctc 36622225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 1870639 - 1870462
Alignment:
Q  123 aaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagta 222  Q
    ||||||||||| ||| |||||||| ||| |||||||||||||| | |||| | ||||  |||||| ||||| || |||||| |||| ||||| ||||||     
T  1870639 aaaggagaatgctaaacagtgccctcggggcattggttaagcaacaaaaacaagtaactttttataaaaaaatg-tgtaattattacttaatcaaaagtc 1870541  T
Q  223 acagtttatgtttccaagacaatttttctacttttggattccttaaccagtg--ctcggggcactggttaacaagaccc 299  Q
    | || |||| ||| |||||||| ||||||| || | | ||||||||||| ||  ||  |||||||||||| ||||||||    
T  1870540 aaagcttatattttcaagacaaattttctatttatagtttccttaaccattgccctgagggcactggttagcaagaccc 1870462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 143884 - 143986
Alignment:
Q  176 gtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa-tttttctacttttggattccttaaccagtg 274  Q
    |||| ||||||||||||| || | ||||||||| || || |||||||||| ||||| |||  ||||||| ||||||||||||| ||||| ||||||||||    
T  143884 gtaagattttattaaaaattggtataataattacttgattaaaagtaacaatttatatttggaagacaaatttttctacttttagattctttaaccagtg 143983  T
Q  275 ctc 277  Q
    |||    
T  143984 ctc 143986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 40664731 - 40664661
Alignment:
Q  190 aaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttgga 260  Q
    ||||||| |||| ||||||||| |  |||||||||||||||| ||||||||||||||||| ||||||||||    
T  40664731 aaaagtggtgtagtaattagttgaccaaaagtaacagtttatatttccaagacaatttttttacttttgga 40664661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 40574290 - 40574137
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    |||||||||||| |||||||||||||  | ||| |||||||||| | |||| | ||| | ||| || |||||||  |||||| |||| |  || ||||||    
T  40574290 aaaaggagaatgctaaccagtgccccaagggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagt 40574191  T
Q  222 aacagtttatgtttccaagacaatttttctacttttggattccttaaccagtgc 275  Q
     ||| ||||| ||||||||||||  |||||| || | |||||||||||||||||    
T  40574190 tacattttatatttccaagacaaaatttctatttgtagattccttaaccagtgc 40574137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 11610554 - 11610513
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagca 165  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  11610554 aaggagaatgttaaccagtgcccccggggcattggttaagca 11610513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 3689762 - 3689584
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||||||| |||||||||||||  | |||||||||||||||| |||| | | | |||||||| | ||||| ||||||| ||||    || ||||||||    
T  3689762 aaggagaatgctaaccagtgccccaagggcattggttaagcagccaaaacaagcacaattttatgataaagttatgtaatcatta--cgatcaaaagtaa 3689665  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcg-gggcactggttaacaagaccctta 302  Q
    ||  |||| |||| |||| ||  |||||| || | || |||||||||| || | || |||||||| |||||||||||||||    
T  3689664 catcttatatttcaaagataaaatttctatttgtagaatccttaaccattgtcccgagggcactgattaacaagaccctta 3689584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 27896463 - 27896580
Alignment:
Q  156 tggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctactt 255  Q
    ||||||| || | |||||| ||||  ||| ||||||||||  |||||| |||| | ||| ||||||||||| |||| |||| || |||| ||||||| |     
T  27896463 tggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 27896562  T
Q  256 ttggattccttaaccagt 273  Q
    |||||| |||||| ||||    
T  27896563 ttggataccttaatcagt 27896580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 8435026 - 8435204
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    ||||||||||||||||||||||| |  |||||||||||||| | |||||| |||| ||||||||||||| || | |||| |||||||  | |||||| ||    
T  8435026 aggagaatgttaaccagtgcccctgaggcattggttaagcatccaaaataagtaagattttattaaaaaatggtataattattagttggtcaaaagttac 8435125  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaaccagtgctc--ggggcactggttaacaagaccctt 301  Q
    | ||||| |||||||||||||||||| |||||| |||| ||||| |||||| |  ||||||| ||||||||||||||||    
T  8435126 actttatatttccaagacaatttttccacttttagatttcttaatcagtgcaccgggggcacgggttaacaagaccctt 8435204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 125 - 302
Target Start/End: Original strand, 19129691 - 19129871
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||| |||||||||| |||||  ||| ||||| ||||||||| ||||| |||||| ||||||||||||| ||   ||||||||||||| | ||||||| |    
T  19129691 aggacaatgttaacccgtgccgtcggggcattcgttaagcagataaaagaggtaagattttattaaaaaatggattaataattagttagtcaaaagtagc 19129790  T
Q  225 agtttatgtttccaagacaatttttctac-ttttggattccttaaccagtgctc--ggggcactggttaacaagaccctta 302  Q
     |||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||  ||| || |||||||| |||||||||    
T  19129791 tgtttatatttccaatacaatttttttactttttggattccttaaccagtgctctggggacaatggttaaccagaccctta 19129871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 35556850 - 35557027
Alignment:
Q  123 aaaggagaatgttaaccagtgccccc-ggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    |||||||||||||||| | |||| || || |||||||||||||| |||||| |||||| | |||||||||| ||| ||||||||||||||| | |||| |    
T  35556850 aaaggagaatgttaactaatgcctcctggggcattggttaagcaactaaaagaggtaagaatttattaaaa-gtggtgtaataattagttagtcaaaaat 35556948  T
Q  222 aacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcggggcactggttaacaagaccc 299  Q
      |||||||| ||| |||||||||||||||||||||| ||||  |||| | || |||| ||||||||||||||||||||    
T  35556949 ggcagtttatattttcaagacaatttttctacttttgaattctgtaacaaatgtctcgaggcactggttaacaagaccc 35557027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 2611293 - 2611142
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||||||||||||||| ||||| || |||||||||||||| | |||  | ||||  |||||||||||||| ||||||| |||| |||||||||||| |    
T  2611293 aaggagaatgttaaccagggcccctggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 2611195  T
Q  224 cagtttatgtttccaagaca-atttttctacttttggattccttaaccagtgc 275  Q
    ||| |||| ||||||||||| |  |||||| || | |||||||||||||||||    
T  2611194 cagcttatatttccaagacataaatttctatttatagattccttaaccagtgc 2611142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 125 - 296
Target Start/End: Complemental strand, 7609683 - 7609513
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||||||||||||||||||| ||||| |||||||||||||| | |||| | ||||  |||||||||||||| ||||||| |||| || ||||||| | |     
T  7609683 aggagaatgttaaccagtgctcccggggcattggttaagca-ccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgat 7609585  T
Q  225 agtttatgtttccaagacaatttttctacttttggattccttaaccagtgctcggggcactggttaacaaga 296  Q
    ||||||| ||||||| |||    ||||| || | |||||||||| |||||| | ||||||| ||||||||||    
T  7609584 agtttatatttccaaaacagaaattctaattatagattccttaatcagtgccccgggcactcgttaacaaga 7609513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 124 - 302
Target Start/End: Original strand, 14863305 - 14863484
Alignment:
Q  124 aaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaa 223  Q
    |||||||||||||| ||||||||||||| ||||||||||||| | |||| | ||||  |||||||||||| | ||||||| |||| || ||||||||| |    
T  14863305 aaggagaatgttaatcagtgcccccggaacattggttaagca-ccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtga 14863403  T
Q  224 cagtttatgtttccaagacaatttttctacttttggattccttaaccagtgctcgg--ggcactggttaacaagaccctta 302  Q
    |||||||| ||| |||||||    || || || | ||||| ||||||||||  | |  |||||||||||||||||||||||    
T  14863404 cagtttatattttcaagacataaattatatttatagattctttaaccagtgtcccgaaggcactggttaacaagaccctta 14863484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 26139710 - 26139807
Alignment:
Q  204 aattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagt-gctcg-gggcactggttaacaagaccc 299  Q
    ||||||||| | ||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||  | || |||||||||||||||||||||    
T  26139710 aattagttagtcaaaagtaaccggttatatttccaagacagtttttctacttttggattccttaaccagtatcccgagggcactggttaacaagaccc 26139807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 10568975 - 10569063
Alignment:
Q  185 tattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg 274  Q
    |||||||||||| ||||||||| |||   | |||||||| ||||||| |||  |||||||||||| ||||||||||||||||||||||||    
T  10568975 tattaaaaagtggtgtaataat-agtcggtcaaaagtaaaagtttatatttttaagacaatttttttacttttggattccttaaccagtg 10569063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 21052774 - 21052656
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    |||||||||||||||| |||||  || ||| ||||||||||||| | |||| | ||||  |||||||||||| | ||||||| |||| || |||||||||    
T  21052774 aaaaggagaatgttaatcagtgtacctggaacattggttaagcacc-aaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagt 21052676  T
Q  222 aacagtttatgtttccaaga 241  Q
     ||||||||| ||| |||||    
T  21052675 gacagtttatatttgcaaga 21052656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 7319227 - 7319321
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaa 219  Q
    ||||||||||||| |||||||||  | |||||||||||||| | ||||   |||| ||| |||||||||||  ||||||||||| || |||||||    
T  7319227 aggagaatgttaaacagtgccccatgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgataaaaa 7319321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 28812257 - 28812342
Alignment:
Q  123 aaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataatta 208  Q
    ||||||||||||||| | ||||  |||| |||||| |||| |||  |||| |||||| | |||||||||||||| |||||||||||    
T  28812257 aaaggagaatgttaatctgtgcttccggggcattgattaaccagtcaaaagaggtaagagtttattaaaaagtggtgtaataatta 28812342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 11320151 - 11320210
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaaga 241  Q
    |||||||||||||| ||||||| |||| || ||||||||| ||||||||| |||| ||||    
T  11320151 ttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttctaaga 11320210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 16801998 - 16802123
Alignment:
Q  126 ggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaaca 225  Q
    |||||||||||| |||||||| | | | |||||||||||| | |||| |  |||  ||||| |||||||| ||||||| |||| ||||| |||||| | |    
T  16801998 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttta-taaaaagtaatgtaattattacttaatcaaaagtcaaa 16802096  T
Q  226 gtttatgtttccaagacaatttttcta 252  Q
     ||||| ||| |||||||| |||||||    
T  16802097 atttatattttcaagacaaattttcta 16802123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 24231 - 24340
Alignment:
Q  153 cattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaa-tttttct 251  Q
    |||||||||||||||||||| | |||| ||||||||||||  || ||| ||||||||||  | |||| ||| || |||| ||||||| |||| |||||||    
T  24231 cattggttaagcagctaaaagaagtaagattttattaaaagctggtgtgataattagttggtcaaaaataaaaggttatatttccaacacaattttttct 24330  T
Q  252 acttttggat 261  Q
    ||||||||||    
T  24331 acttttggat 24340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 1192 - 1133
Alignment:
Q  182 ttttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaaga 241  Q
    |||||||||||||| ||||||| |||| |||||||||||| ||||||||| ||| |||||    
T  1192 ttttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattttcaaga 1133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 22567 - 22449
Alignment:
Q  125 aggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagtaac 224  Q
    |||||||||||||  ||| ||||||  |||||||||||||| | |||| | ||||  |||||||||| ||| ||||||| |||| || ||||||||| ||    
T  22567 aggagaatgttaaaaagtacccccgaggcattggttaagca-ccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagtgac 22469  T
Q  225 agtttatgtttccaagacaa 244  Q
     |||||| ||||||| ||||    
T  22468 ggtttatatttccaacacaa 22449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 38769 - 38886
Alignment:
Q  122 aaaaggagaatgttaaccagtgcccccggagcattggttaagcagctaaaataggtaaaattttattaaaaagtgatgtaataattagttaataaaaagt 221  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | | || | |  |||  |||||||||||||| ||||||| |||| || ||||||| |    
T  38769 aaaaggagaatgttaaccagtgctct-ggagcattggttaagaatcaaataaaa-taagtttttattaaaaagtaatgtaattattacttgataaaaaat 38866  T
Q  222 aacagtttatgtttccaaga 241  Q
     ||||||||| |||||||||    
T  38867 gacagtttatatttccaaga 38886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 1332 - 1238
Alignment:
Q  208 agttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaaccagtg-ctcggggcactggttaacaagaccctt 301  Q
    |||| ||||||||| ||||||||| |||||||||||    ||||| || | |||||||||||| ||| | |||||||| ||||||||||||||||    
T  1332 agttgataaaaagtgacagtttatatttccaagacagaaattctatttatagattccttaacccgtgccccggggcaccggttaacaagaccctt 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 60516 - 60429
Alignment:
Q  181 attttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaa 268  Q
    ||||||||||||| |  | ||||||||| || ||||||| ||||||||||| |||| ||||||||  || |||||||| |||| ||||    
T  60516 attttattaaaaaatagtataataattaattgataaaaaataacagtttatatttcaaagacaatcattttacttttgaattcattaa 60429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 67848 - 67761
Alignment:
Q  181 attttattaaaaagtgatgtaataattagttaataaaaagtaacagtttatgtttccaagacaatttttctacttttggattccttaa 268  Q
    ||||||||||||| |  | ||||||||| || ||||||| ||||||||||| |||| ||||||||  || |||||||| |||| ||||    
T  67848 attttattaaaaaatagtataataattaattgataaaaaataacagtttatatttcaaagacaatcattttacttttgaattcattaa 67761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University