View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3152_high_5 (Length: 501)
Name: NF3152_high_5
Description: NF3152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3152_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 496
Target Start/End: Original strand, 37219065 - 37219542
Alignment:
| Q |
15 |
atcatattcgacattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttgcgataattttcttgcca |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37219065 |
atcatactcgacattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttgggataattttcttgcca |
37219164 |
T |
|
| Q |
115 |
acctaggattagaattgaattaataactcaaatagttctttaaaaaacactcatataattatggtatcttaaaggaaatgtaattgatcttgagacttcc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37219165 |
acctaggattagaattgaattaataactcaaatagttcttaaaaaaacactcatataattatggtatcttaaaggaaatgtaattgatcttgagacttcc |
37219264 |
T |
|
| Q |
215 |
atataaacttgtttaagaaagaaatgtaactaacaactataaaaatttctcaaacaaaaactataaagattatgccaattttaactgtatatgtaaacac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37219265 |
atataaacttgtttaagaaagaaatgtaactaacaactatataaatttctcaaacaaaaactat-aagattatgccaattttaactgtatatgtaaacac |
37219363 |
T |
|
| Q |
315 |
ttgaattagaagagtaaggatgttttgtcgcatatgtcatgtgagagtaaggcattaaagttttttgattagatataaaacgaccatactttctnnnnnn |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37219364 |
ttgaattagaagagtaaggatgttttgtcgcatatgtcatgtgagagtaaggcattaaagttttttgattagatataaaacgaccatactttct---aaa |
37219460 |
T |
|
| Q |
415 |
nnnnnncaaagaaaagaccaactgcatcatgtctctgtttcctaacagtagtgtggataagaatggtagggtctctgctcct |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37219461 |
aaaaaacaaagaaaagaccaactgcatcatgtctctgtttcctaacagtagtgtggataagaatggtagggtctctgctcct |
37219542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 6412011 - 6411940
Alignment:
| Q |
26 |
cattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttg |
97 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||| ||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
6412011 |
cattctttatcttatccatctttttaattgaaatgtctcgttaaagtatatttacaaggaagttaactcttg |
6411940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University