View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3152_low_13 (Length: 266)
Name: NF3152_low_13
Description: NF3152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3152_low_13 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 44949672 - 44949419
Alignment:
| Q |
1 |
ataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaagatataa |
100 |
Q |
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| T |
44949672 |
ataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacgaagatataa |
44949573 |
T |
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| Q |
101 |
agcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgatgggaagcttgatatgggttttatagatgctctaaa |
200 |
Q |
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| T |
44949572 |
agcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgatgggaagcttgatacgggttttatagatgctctaaa |
44949473 |
T |
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| Q |
201 |
gaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatg |
254 |
Q |
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| T |
44949472 |
gaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatg |
44949419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 6470464 - 6470268
Alignment:
| Q |
58 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
157 |
Q |
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| T |
6470464 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
6470365 |
T |
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| Q |
158 |
atagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatg |
254 |
Q |
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| T |
6470364 |
acagtgaagggagtcttgatacggtttttatagacgctctaaagcaaacgtgcctgcaatgcatttcattggagagagtttccacatgtgatggatg |
6470268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 44943734 - 44943630
Alignment:
| Q |
150 |
gcatttttatagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgat |
249 |
Q |
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|||||||||| |||||||||| ||||||| || ||| |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || |
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| T |
44943734 |
gcatttttatggtgatgggaaacttgatacggttttgatagatactctaaagaatgtgtacttgaaatgcattttcatgcagaaagtttccacatgtaat |
44943635 |
T |
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| Q |
250 |
ggatg |
254 |
Q |
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||||| |
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| T |
44943634 |
ggatg |
44943630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 44943804 - 44943742
Alignment:
| Q |
40 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaagatataaag |
102 |
Q |
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| T |
44943804 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaaggtataaag |
44943742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 254
Target Start/End: Original strand, 419220 - 419416
Alignment:
| Q |
58 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
157 |
Q |
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||||||||||||||| ||||| |||| ||||||||| ||||||| |||||||| | ||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
419220 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
419319 |
T |
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| Q |
158 |
atagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatg |
254 |
Q |
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| || || |||| ||||||| || ||||||||||||||||||||| ||||||| ||||||||| | || | ||||||||||||||||||||| |
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| T |
419320 |
acagcgaagggagtcttgatacggtttttatagatgctctaaagaaaacgtgcttgcaatgcatttcattacagagagtttccacatgtgatggatg |
419416 |
T |
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