View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3152_low_2 (Length: 552)
Name: NF3152_low_2
Description: NF3152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3152_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Complemental strand, 627569 - 627041
Alignment:
| Q |
20 |
ttctatcaatctcaaaaactccatgcacaatatgttgtgaagttatatccaaattaagcagtaacatttctctcatcaggtttgtattgtaccttaatta |
119 |
Q |
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| T |
627569 |
ttctatcaatctcaaaaactccatgcacaatatgttgtgaagttatatccaaattaagcagtaacatttctctcatcaggtttgtattgtaccttaatta |
627470 |
T |
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| Q |
120 |
gtacatgcatacata------tatttatgtcatagttttagttaattagttattataaggtttttgatattgcaataatccttcagttgctgatgggaag |
213 |
Q |
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| T |
627469 |
gtacatgcatacatacatatatatttatgtcatagttttagttaatttgttattataaggtttttgatattgtaataatccttcagttgctgatgggaag |
627370 |
T |
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| Q |
214 |
aaaaggaggaagttggttctcttctgtcaagaaagttttcaagtcatcttcatcttctaaggacacgtcagtgccggtctccacgccggtgcagccggag |
313 |
Q |
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| T |
627369 |
aaaaggaggaagttggttctcttctgtcaagaaagttttcaagtcttcttcatcttctaaggacacgtcagtgccggtctccacgccggtgcagccggag |
627270 |
T |
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| Q |
314 |
aaaaaggtcatcaattttcatattcatttaattataggatcatatgagataataatccttcttcatttcttttcaaattgacgaggaatttttcgagcac |
413 |
Q |
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| T |
627269 |
aaaaaggtcatcaattctcatcttcatttaattataggatcatatgagatgttaatccttcttcatttcttttcaaattgtcgaggaatttttcgagcac |
627170 |
T |
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| Q |
414 |
cagaaacaataacggactaatgacaaggactgttaagagatcagaactacacgagatagttagtggtgtcctgatgttttgatagttcaagtcattagtt |
513 |
Q |
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| T |
627169 |
cagaaacaataacggactaatgacaaggactattaagagatcagaactacacgagatagtaagtggtgtcctgatgttttgatagttcaagtcattagtt |
627070 |
T |
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| Q |
514 |
cgttatagtttttggtgcattgctctctg |
542 |
Q |
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| T |
627069 |
cgttatagtttttggtgcattgctctctg |
627041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 41669864 - 41669913
Alignment:
| Q |
215 |
aaaggaggaagttggttctcttctgtcaagaaagttttcaagtcatcttc |
264 |
Q |
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| T |
41669864 |
aaaggaagcagttggttctcatctgtgaagaaagttttcaagtcttcttc |
41669913 |
T |
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