View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3152_low_6 (Length: 516)
Name: NF3152_low_6
Description: NF3152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3152_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 55447702 - 55447896
Alignment:
| Q |
12 |
agcagaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagacgtgggatgatgcagttgcttaaagggtagaaatgaaattttgtgac |
111 |
Q |
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| T |
55447702 |
agcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaataggcagagacgtggggtgatgcagttacttaaagggtagaaatgaaattttgtgac |
55447801 |
T |
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| Q |
112 |
atttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggataatagttgaaaataattatcgggtata |
206 |
Q |
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| T |
55447802 |
atttaatggatgttaaccgctgggaataagtgattcccatcctttgggttgggaataaaaaatgggataatagttgaaaataattatcgggtata |
55447896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 41415910 - 41415607
Alignment:
| Q |
12 |
agcagaacctgtgtaaaggcaggaagaaaacgtggcacataaatatgcagagacgtgggatg--atgcagttgcttaaagggtagaaatgaaattttgtg |
109 |
Q |
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| T |
41415910 |
agcaaaacctgtgtaaagacaagaagaaaacgtaacacataagtaggtagaaacgtgggatgccatgcggttac--aaggggtagaaatgaacttttgag |
41415813 |
T |
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| Q |
110 |
acatttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggata--atagttgaaaataattatcgggtataa |
207 |
Q |
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| T |
41415812 |
atatt-aatggatgttaaccgctgggaataagtcattcccatcctttgtgctgggaataaaaaatgggagaatatagttaaaaataattaccgggtataa |
41415714 |
T |
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| Q |
208 |
ttaattccttaaaacnnnnnnnnnnnnatgcatgtgtaccaaacattggaataaatagttctcatcttacattctcatgaacttattttgtagaagtgaa |
307 |
Q |
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| T |
41415713 |
ttaattccttggaac----ctttttgtatgcatgtgtaccaaacattgcaataaatagttcccatcttacattcccaggaacttattttgtagaggggaa |
41415618 |
T |
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| Q |
308 |
acaaatgcccc |
318 |
Q |
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| T |
41415617 |
acaaacgcccc |
41415607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 419 - 516
Target Start/End: Original strand, 55448130 - 55448227
Alignment:
| Q |
419 |
cacatattaattactaaattgacggggattgaaaaagaaaatgacggaattgagatgagaagtggaggaagagcagagcagcagagatctagctagta |
516 |
Q |
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| T |
55448130 |
cacatattaattactaaattgacggggattgaaaaagaaaatgacggaattgagatgagaagtggaggaagagcagagcagcagagatctagttagta |
55448227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 55447954 - 55448043
Alignment:
| Q |
235 |
atgcatgtgtaccaaacattggaataaatagttctcatcttacattctcatgaacttattttgtagaagtgaaacaaatgcccctaagag |
324 |
Q |
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| T |
55447954 |
atgcatgtgtatcaaacattggaataaatagttcctatcttacattctcagaaacttattttgtagaagtgaaacaaacgcccctaagag |
55448043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 292
Target Start/End: Original strand, 41418302 - 41418502
Alignment:
| Q |
89 |
gggtagaaatgaaattttgtgacatttaatggatgttaaccgttgggaataagtgattcccatcctttgggttggggataaaaaatgggata--atagtt |
186 |
Q |
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| T |
41418302 |
gggtagaaatgaacttttgagatatt-aatggatgttaactgcttggaataagtcattcccatcctttctgttgggaataaaatatgggataatatagtt |
41418400 |
T |
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| Q |
187 |
gaaaataattatcgggtataattaattccttaaaacnnnnnnnnnnnnatgcatgtgtaccaaacattggaataaatagttctcatcttacattctcatg |
286 |
Q |
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| T |
41418401 |
aaaaataattaccggatataattaatttcttggaac----ctttttgtatgcatgtgtaccaaatattggaataaatagttcccatcttacattcccagg |
41418496 |
T |
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| Q |
287 |
aactta |
292 |
Q |
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|||||| |
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| T |
41418497 |
aactta |
41418502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 36366884 - 36366930
Alignment:
| Q |
235 |
atgcatgtgtaccaaacattggaataaatagttctcatcttacattc |
281 |
Q |
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| T |
36366884 |
atgcatgtataccaaacataggaataaataattctcatcttagattc |
36366930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 6813394 - 6813440
Alignment:
| Q |
235 |
atgcatgtgtaccaaacattggaataaatagttctcatcttacattc |
281 |
Q |
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| T |
6813394 |
atgcatgtataccaaacataggaataaataattctcatcttagattc |
6813440 |
T |
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