View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3153_low_5 (Length: 235)

Name: NF3153_low_5
Description: NF3153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3153_low_5
NF3153_low_5
[»] chr4 (13 HSPs)
chr4 (37-222)||(30739479-30739664)
chr4 (57-208)||(18921880-18922031)
chr4 (62-177)||(10552637-10552752)
chr4 (62-163)||(11131172-11131273)
chr4 (62-177)||(54870803-54870918)
chr4 (52-176)||(42527317-42527441)
chr4 (95-163)||(37207413-37207481)
chr4 (91-142)||(52578018-52578069)
chr4 (62-152)||(13137104-13137194)
chr4 (83-135)||(19846569-19846621)
chr4 (91-173)||(40153939-40154021)
chr4 (62-119)||(48337017-48337074)
chr4 (77-117)||(27270006-27270046)
[»] chr6 (7 HSPs)
chr6 (37-205)||(15117211-15117379)
chr6 (40-207)||(18672004-18672170)
chr6 (62-167)||(11298577-11298682)
chr6 (62-222)||(29321309-29321469)
chr6 (62-144)||(32533049-32533131)
chr6 (48-177)||(18015716-18015845)
chr6 (62-120)||(5667350-5667408)
[»] chr8 (8 HSPs)
chr8 (37-222)||(38685714-38685899)
chr8 (57-186)||(38233192-38233321)
chr8 (62-222)||(7179015-7179175)
chr8 (62-142)||(37929141-37929221)
chr8 (57-144)||(41255017-41255104)
chr8 (51-144)||(10616936-10617029)
chr8 (62-178)||(16489445-16489561)
chr8 (75-163)||(33191201-33191289)
[»] chr2 (5 HSPs)
chr2 (57-222)||(1997677-1997842)
chr2 (40-177)||(40426889-40427026)
chr2 (62-144)||(841533-841615)
chr2 (62-177)||(24739816-24739931)
chr2 (80-142)||(45131129-45131191)
[»] chr5 (7 HSPs)
chr5 (57-207)||(7465192-7465342)
chr5 (113-191)||(12564929-12565007)
chr5 (58-177)||(7961125-7961244)
chr5 (62-176)||(32017969-32018083)
chr5 (65-177)||(21041948-21042060)
chr5 (77-142)||(27482671-27482736)
chr5 (91-152)||(29994642-29994703)
[»] chr3 (10 HSPs)
chr3 (73-216)||(19979274-19979417)
chr3 (68-222)||(29542378-29542532)
chr3 (62-174)||(41878694-41878806)
chr3 (58-142)||(42806270-42806354)
chr3 (65-177)||(6925950-6926062)
chr3 (57-177)||(53876861-53876981)
chr3 (73-143)||(22534036-22534106)
chr3 (62-141)||(6894228-6894307)
chr3 (91-177)||(37537242-37537328)
chr3 (91-163)||(47161001-47161073)
[»] chr1 (10 HSPs)
chr1 (37-138)||(50039686-50039784)
chr1 (48-177)||(12688177-12688306)
chr1 (62-162)||(28442130-28442230)
chr1 (58-177)||(28400494-28400613)
chr1 (73-174)||(5411741-5411842)
chr1 (57-177)||(48973650-48973770)
chr1 (50-177)||(45718332-45718458)
chr1 (91-142)||(9484879-9484930)
chr1 (80-142)||(26260785-26260847)
chr1 (62-142)||(5958311-5958391)
[»] chr7 (5 HSPs)
chr7 (62-144)||(40616719-40616801)
chr7 (62-222)||(27854836-27854996)
chr7 (92-174)||(38342966-38343048)
chr7 (62-177)||(34871565-34871680)
chr7 (126-177)||(11884365-11884416)
[»] scaffold0225 (1 HSPs)
scaffold0225 (91-163)||(6518-6590)
[»] scaffold0204 (1 HSPs)
scaffold0204 (62-119)||(24539-24596)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 30739479 - 30739664
Alignment:
Q  37 cagcaaaggagactacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttc 136  Q
    ||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  30739479 cagcaaaggagactacaaagtttaacctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttc 30739578  T
Q  137 aaccacttataagttagcagcttaatcatgtacaccacctgaacgattgaactatgtttatcattaaaaatcctattattcttttc 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  30739579 aaccacttataagttagcagcttaatcatgtccaccacctgaacgattgaaccatgtttatcattaaaaatcttgttattcttttc 30739664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 18922031 - 18921880
Alignment:
Q  57 tttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcag 156  Q
    |||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  18922031 tttaacctatgcctaataaagtgaaaggactagtcaaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcag 18921932  T
Q  157 cttaatcatgtacaccacctgaacgattgaactatgtttatcattaaaaatc 208  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  18921931 cttaatcctgtccaccacctgaacaattgaactatgtttatcattaaaaatc 18921880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 10552752 - 10552637
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    |||||||||| ||||||||| ||||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  | |||| || |||||    
T  10552752 cctatgcctactaaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaatgttaacaacttaa 10552653  T
Q  162 tcatgtacaccacctg 177  Q
    || | | |||||||||    
T  10552652 tcctatccaccacctg 10552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 11131172 - 11131273
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||| ||||||||||| || ||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||| ||||| |||||    
T  11131172 cctattcctaataaagtaaaaggactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaacttaa 11131271  T
Q  162 tc 163  Q
    ||    
T  11131272 tc 11131273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 54870803 - 54870918
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    |||||||||| |||||| || ||||||  |||||||||||||||||||||||||||||| ||| ||||||| || ||||||||  |||| | ||  ||||    
T  54870803 cctatgcctagtaaagtaaacggactaagccaccaaccatgataattaaagggaagagttacaaacttcacatttaaccacttgaaagtcaacaatttaa 54870902  T
Q  162 tcatgtacaccacctg 177  Q
    || ||| |||||||||    
T  54870903 tcttgtccaccacctg 54870918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 42527317 - 42527441
Alignment:
Q  52 cagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagtt 151  Q
    ||||||||| ||||||| || ||| ||||| ||| ||  ||||||||||||||||||  | |||||||||  | | ||||||||||||||||| || |||    
T  42527317 cagaatttagcctatgcttagtaatgtgaacggattaagccaccaaccatgataattggaaggaagagtagaaaatttcaccttcaaccacttgtaggtt 42527416  T
Q  152 agcagcttaatcatgtacaccacct 176  Q
    | || ||||||||||| | ||||||    
T  42527417 aacaacttaatcatgtccgccacct 42527441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 37207413 - 37207481
Alignment:
Q  95 caaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatc 163  Q
    |||||||||||||||||||||||||| | | |||||||||| ||||| ||  ||||||||| |||||||    
T  37207413 caaccatgataattaaagggaagagttataaacttcacctttaaccaattgaaagttagcaacttaatc 37207481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 52578069 - 52578018
Alignment:
Q  91 ccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    |||||||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  52578069 ccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccac 52578018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 13137194 - 13137104
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagtta 152  Q
    |||||||||| ||| || || ||||||  |||||||||||||||||| |||  ||||||| || | ||||||||||||||| | |||||||    
T  13137194 cctatgcctagtaaggtaaacggactaagccaccaaccatgataattgaagaaaagagtagcaaatttcaccttcaaccacctgtaagtta 13137104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 19846621 - 19846569
Alignment:
Q  83 ggactattccaccaaccatgataattaaagggaagagtaacatacttcacctt 135  Q
    |||||| ||||||| ||||||||||| |||||||||| | |||||||||||||    
T  19846621 ggactaatccaccacccatgataattgaagggaagagaagcatacttcacctt 19846569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 40153939 - 40154021
Alignment:
Q  91 ccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatcatgtacacca 173  Q
    |||||||| |||||| |||||||||||| || || | ||||||||||||||| | ||||||| |  ||||||| ||| |||||    
T  40153939 ccaccaactatgatagttaaagggaagattagcaaatttcaccttcaaccacctgtaagttaccgacttaatcttgtccacca 40154021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 48337074 - 48337017
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagag 119  Q
    ||||||||||||| |||||||| ||||  |||||||| ||||| ||| ||||||||||    
T  48337074 cctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagag 48337017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 27270006 - 27270046
Alignment:
Q  77 gtgaatggactattccaccaaccatgataattaaagggaag 117  Q
    ||||||||||||  |||||||||||||||||| ||||||||    
T  27270006 gtgaatggactaagccaccaaccatgataattgaagggaag 27270046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 15117211 - 15117379
Alignment:
Q  37 cagcaaaggagactacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttc 136  Q
    ||||||||||||||| | | |||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  15117211 cagcaaaggagactatatagtttatcatatgcctaataaagtgaaaggactactccaccaaccatgataattaaagggaagagtagcatacttcaccttc 15117310  T
Q  137 aaccacttataagttagcagcttaatcatgtacaccacctgaacgattgaactatgtttatcattaaaa 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  15117311 aaccacttataagttagcagcttaatcatgtccaccacctgattgattgaactatgtttatcattaaaa 15117379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 18672170 - 18672004
Alignment:
Q  40 caaaggagactacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaac 139  Q
    ||||||||||||||||  ||| |||||||||| ||| ||||| |||||   ||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  18672170 caaaggagactacagagattagcctatgcctagtaaggtgaacggactcagccaccaaccatgatagttaaagggaagagtag-atacttcaccttcaac 18672072  T
Q  140 cacttataagttagcagcttaatcatgtacaccacctgaacgattgaactatgtttatcattaaaaat 207  Q
    |||||||||||||||| ||||||| ||| |||| ||||||  ||||| |||| |||  ||||||||||    
T  18672071 cacttataagttagcaacttaatcttgtccaccccctgaataattgagctatcttttgcattaaaaat 18672004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 11298577 - 11298682
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||| |||| |||||| |||||||||  ||||||||||||||| |||||||||||||| ||| |||||||||||||||||| | |||||| || |||||    
T  11298577 cctattcctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactgaaaagttaacaacttaa 11298676  T
Q  162 tcatgt 167  Q
    ||||||    
T  11298677 tcatgt 11298682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 29321309 - 29321469
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||| |||| |||||| |||||||||  ||||||||||| ||| |||||||||||||| ||| ||||||| ||||||||||   |||||| || |||||    
T  29321309 cctattcctagtaaagtaaatggactaagccaccaaccatcatagttaaagggaagagtgacaaacttcactttcaaccactggaaagttaacaacttaa 29321408  T
Q  162 tcatgtacaccacctgaacgattgaactatgtttatcattaaaaatcctattattcttttc 222  Q
    || ||| ||||||||| |  || ||||||   ||  |||||||||||||||||||| ||||    
T  29321409 tcctgtccaccacctgcataatagaactaacctttgcattaaaaatcctattattcctttc 29321469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 32533049 - 32533131
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccactt 144  Q
    ||||||||| |||||||||| ||||||  ||||||||||||||| ||||||||||||||| || |||||| ||||||||||||    
T  32533049 cctatgcctcataaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccactt 32533131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 18015716 - 18015845
Alignment:
Q  48 actacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttata 147  Q
    ||||||||| ||| ||||||| || |||||| || ||| ||  ||||||||||||||| ||||||||||||||   | ||||||||  |||||||||| |    
T  18015716 actacagaaattagcctatgcgtagtaaagtaaacggagtaagccaccaaccatgatagttaaagggaagagttgtaaacttcacccccaaccacttaaa 18015815  T
Q  148 agttagcagcttaatcatgtacaccacctg 177  Q
     |||| || ||||||| | | |||||||||    
T  18015816 cgttaacaacttaatcctatccaccacctg 18015845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 5667350 - 5667408
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagt 120  Q
    ||||||||||| | ||| || |||||| ||||||||||||||||||| |||| ||||||    
T  5667350 cctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaaggaaagagt 5667408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 38685899 - 38685714
Alignment:
Q  37 cagcaaaggagactacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttc 136  Q
    |||||||||||||||||||  |||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  38685899 cagcaaaggagactacagagattatcctacgcctaataaagtgaacggactaatccaccaaccatgatagttaaagggaagagtagcatacttcaccttc 38685800  T
Q  137 aaccacttataagttagcagcttaatcatgtacaccacctgaacgattgaactatgtttatcattaaaaatcctattattcttttc 222  Q
     |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  || ||||||| ||||||||| ||||    
T  38685799 gaccacttataagttagcaacttaatcatgtccaccacctgaacgattgaactatgttttgcaataaaaattctattattcctttc 38685714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 38233321 - 38233192
Alignment:
Q  57 tttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcag 156  Q
    |||| |||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  38233321 tttaacctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcag 38233222  T
Q  157 cttaatcatgtacaccacctgaacgattga 186  Q
    ||||||| ||| |||||||| ||| |||||    
T  38233221 cttaatcttgtccaccacctaaacaattga 38233192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 7179015 - 7179175
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||| |||| |||||| | |||||||  ||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||  |||||| || |||||    
T  7179015 cctattcctagtaaagtaattggactaagccaccaatcatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaagttaacaacttaa 7179114  T
Q  162 tcatgtacaccacctgaacgattgaactatgtttatcattaaaaatcctattattcttttc 222  Q
    | |||| |||||| || |  || ||||||   ||  |||||||||||||||||||| ||||    
T  7179115 ttatgtccaccacttgcagaatagaactaacctttgcattaaaaatcctattattcctttc 7179175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 37929221 - 37929141
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    ||||||||||| || ||||| ||||||  ||||||||||||||| |||||||||||||||  | | |||||||||||||||    
T  37929221 cctatgcctaacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 37929141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 41255017 - 41255104
Alignment:
Q  57 tttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccactt 144  Q
    |||| |||||| ||||||||| ||| ||||||  ||||||||||||||| ||||||||||||  | |||| || ||||||||||||||    
T  41255017 tttagcctatgtctaataaagggaacggactaagccaccaaccatgatagttaaagggaagataagcatagttaaccttcaaccactt 41255104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 10617029 - 10616936
Alignment:
Q  51 acagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccactt 144  Q
    |||||| ||| |||||||||||||||| ||| | ||||  ||||||||||||||| || || |||| |||| || ||||||||| |||||||||    
T  10617029 acagaaattagcctatgcctaataaagcgaacgaactaagccaccaaccatgatagttgaaaggaatagtagcaaacttcacctccaaccactt 10616936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 16489445 - 16489561
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    |||||||| | ||||||||||||||||  |||||| | |||||| |||||  |||||  |||| ||||||||||||||||||   |||||| || |||||    
T  16489445 cctatgccaagtaaagtgaatggactaagccaccacctatgatagttaaaaagaagatgaacaaacttcaccttcaaccactggaaagttaacaacttaa 16489544  T
Q  162 tcatgtacaccacctga 178  Q
    || | | ||||||||||    
T  16489545 tcctatccaccacctga 16489561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 33191201 - 33191289
Alignment:
Q  75 aagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatc 163  Q
    ||||||| ||||||  |||||||||||||||||| |||||||||||| || | |||| |||||||||| | || |||| || |||||||    
T  33191201 aagtgaacggactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgtgtatgttaacaacttaatc 33191289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 1997677 - 1997842
Alignment:
Q  57 tttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcag 156  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  1997677 tttaacctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcag 1997776  T
Q  157 cttaatcatgtacaccacctgaacgattgaactatgtttatcattaaaaatcctattattcttttc 222  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| ||||||| | ||| |||||||    
T  1997777 cttaatcatgtccaccacctgaacaattgaactatgtttatcatcaaaaatcatgttaatcttttc 1997842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 40426889 - 40427026
Alignment:
Q  40 caaaggagactacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaac 139  Q
    ||||||| |||||| |||||| || ||||||| ||||||||| ||| ||  ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  40426889 caaaggaaactacataatttagccgatgcctagtaaagtgaacggattaagccaccaaccatgatagttaaagggaagagtaacatacttcactttcaac 40426988  T
Q  140 cacttataagttagcagcttaatcatgtacaccacctg 177  Q
     ||||| ||||||||| ||||||| ||| |||||||||    
T  40426989 tacttacaagttagcaacttaatcctgtccaccacctg 40427026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 841533 - 841615
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccactt 144  Q
    |||||||||| |||||||||  |||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  841533 cctatgcctagtaaagtgaacagactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccactt 841615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 24739931 - 24739816
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||||||||  | |||||| ||||||  ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  | |||| || |||||    
T  24739931 cctatgcctagaatagtgaacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgttaacaacttaa 24739832  T
Q  162 tcatgtacaccacctg 177  Q
    || | | |||||||||    
T  24739831 tcctatccaccacctg 24739816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 45131129 - 45131191
Alignment:
Q  80 aatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    |||||||||  |||||| ||||||||||| |||||||||| | |||| ||| |||||||||||    
T  45131129 aatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccac 45131191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 7465342 - 7465192
Alignment:
Q  57 tttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcag 156  Q
    |||| |||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  7465342 tttaacctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcag 7465243  T
Q  157 cttaatcatgtacaccacctgaacgattgaactatgtttatcattaaaaat 207  Q
    ||||||| ||| |||||||| ||| |||||||| |||||||||||||||||    
T  7465242 cttaatcttgtccaccacctaaacaattgaactgtgtttatcattaaaaat 7465192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 12564929 - 12565007
Alignment:
Q  113 ggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatcatgtacaccacctgaacgattgaactat 191  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||    
T  12564929 ggaatagtagcatacttcaccttcaaccacttataagttagcagcttaaacctgtccaccacctgaacgattgaactat 12565007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 7961125 - 7961244
Alignment:
Q  58 ttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagc 157  Q
    |||||||||||||| ||||||||| | ||||  ||||||||||||||| |||||  |||||||| |||||||| |||||||||||||  | ||||||| |    
T  7961125 ttatcctatgcctagtaaagtgaacgaactaagccaccaaccatgatagttaaaatgaagagtagcatacttcgccttcaaccacttgaatgttagcaac 7961224  T
Q  158 ttaatcatgtacaccacctg 177  Q
    |||||| | | |||||||||    
T  7961225 ttaatcctatccaccacctg 7961244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 32017969 - 32018083
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||||||||  | || ||||| ||||  |||||||||||||||||||||||||||  || |||||| |||||||||||||||  |||||| || |||||    
T  32017969 cctatgcctagaatagagaatgaactaagccaccaaccatgataattaaagggaaggttagcatactgcaccttcaaccacttgaaagttaacaacttaa 32018068  T
Q  162 tcatgtacaccacct 176  Q
    || | | ||||||||    
T  32018069 tcctatccaccacct 32018083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 21042060 - 21041948
Alignment:
Q  65 atgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatca 164  Q
    ||||||| ||| || || ||||||  |||||| ||||||||||||||||||||||| ||| |||||||||  ||||||||  |||| | || ||||||      
T  21042060 atgcctagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctataaccacttgaaagtcaacaacttaattt 21041961  T
Q  165 tgtacaccacctg 177  Q
    ||| |||||||||    
T  21041960 tgtccaccacctg 21041948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 27482671 - 27482736
Alignment:
Q  77 gtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    ||||| ||||||  |||||| ||||||||||| |||||||| ||||| || |||||||||||||||    
T  27482671 gtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccac 27482736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 29994703 - 29994642
Alignment:
Q  91 ccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagtta 152  Q
    |||||||||||||||||| |||||||||  |  | |||||||||||||||||||| ||||||    
T  29994703 ccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaaagtta 29994642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 19979274 - 19979417
Alignment:
Q  73 taaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatcatgtacacc 172  Q
    |||||| ||||| |||  ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||  |||||| |||||||||||||| ||||    
T  19979274 taaagtaaatgggctaagccaccaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaagttaacagcttaatcatgtccacc 19979373  T
Q  173 acctgaacgattgaactatgtttatcattaaaaatcctattatt 216  Q
    ||||| |  || ||||||   ||  |||||||||||||||||||    
T  19979374 acctgcagaatagaactagcctttgcattaaaaatcctattatt 19979417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 29542378 - 29542532
Alignment:
Q  68 cctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatcatgt 167  Q
    |||| |||||| |||||||||  ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||   |||||||||  ||||||||||    
T  29542378 cctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaagttagcaagttaatcatgt 29542477  T
Q  168 acaccacctgaacgattgaactatgtttatcattaaaaatcctattattcttttc 222  Q
     ||||||||| |  || || |||   ||  |||||||||||||||||||| ||||    
T  29542478 ccaccacctgtataatagagctaaccttggcattaaaaatcctattattcctttc 29542532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 41878806 - 41878694
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||| |||| |||||| |||||||||  ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||   ||||||||| |||||    
T  41878806 cctattcctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaagttagcaacttaa 41878707  T
Q  162 tcatgtacaccac 174  Q
    || ||| ||||||    
T  41878706 tcctgtccaccac 41878694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 42806270 - 42806354
Alignment:
Q  58 ttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    |||||||||||| | ||||||||||||||||  |||||| |||||||| ||||| |||||||| ||| |||||||||||||||||    
T  42806270 ttatcctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccac 42806354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 6926062 - 6925950
Alignment:
Q  65 atgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatca 164  Q
    ||||||| ||| || || ||||||  |||||| ||||||||||||||||||||||| ||| |||||||||| |||||||| ||||| | || ||||||      
T  6926062 atgcctagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgtaagtcaacaacttaattt 6925963  T
Q  165 tgtacaccacctg 177  Q
    ||| |||||||||    
T  6925962 tgtccaccacctg 6925950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 53876861 - 53876981
Alignment:
Q  57 tttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcag 156  Q
    |||| |||||||||| |||||| || |||| |  |||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||  |||| | ||     
T  53876861 tttagcctatgcctagtaaagtaaacggaccaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaa 53876960  T
Q  157 cttaatcatgtacaccacctg 177  Q
    ||||||  ||| |||||||||    
T  53876961 cttaattttgtccaccacctg 53876981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 22534106 - 22534036
Alignment:
Q  73 taaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccact 143  Q
    |||||| |||||||||  |||||| |||||||| ||||| |||||||| ||| ||||||||||||||||||    
T  22534106 taaagtaaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccact 22534036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 6894307 - 6894228
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaacca 141  Q
    ||||||||||| | ||| || |||||| ||||||||||||||||||| ||||||||||| | | || || ||||||||||    
T  6894307 cctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaacca 6894228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 37537242 - 37537328
Alignment:
Q  91 ccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatcatgtacaccacctg 177  Q
    |||||||||||||||| |||||||||||| | |  ||||||||||||||||| || | ||||  | ||||||| ||| |||||||||    
T  37537242 ccaccaaccatgataagtaaagggaagagaagcgaacttcaccttcaaccacctaaaggttacaaccttaatcttgtccaccacctg 37537328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 47161073 - 47161001
Alignment:
Q  91 ccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatc 163  Q
    |||||||||||| ||||| || ||||||| |  | |||||||||||||||||||| |||||| || |||||||    
T  47161073 ccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaaagttaacaacttaatc 47161001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 50039784 - 50039686
Alignment:
Q  37 cagcaaaggagactacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttc 136  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| |||||| ||||||||||   ||||||||||||||||||| ||||||||||||||    
T  50039784 cagcaaaggagactacagagattatcctatgcctcataaagtgaacggactaatccaccaacc---ataattaaagggaagagtagcatacttcaccttc 50039688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 12688306 - 12688177
Alignment:
Q  48 actacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttata 147  Q
    ||||||||| ||| | |||||||| |||||| || ||||||  |||||| |||||||| ||||||||||||||   | |||||||||||||||||||| |    
T  12688306 actacagaaattagcatatgcctagtaaagtaaacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaa 12688207  T
Q  148 agttagcagcttaatcatgtacaccacctg 177  Q
    |||||||| ||||||| | | |||||||||    
T  12688206 agttagcaacttaatcttatccaccacctg 12688177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 28442130 - 28442230
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||| |||||||||||||  ||| ||||||||||||||||||   ||||||||| |||||    
T  28442130 cctattcctaataaagtaaatggactaagccaccaaccatgatagttaaagggaagagagacaaacttcaccttcaaccactggaaagttagcaacttaa 28442229  T
Q  162 t 162  Q
    |    
T  28442230 t 28442230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 28400613 - 28400494
Alignment:
Q  58 ttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagc 157  Q
    |||||||||||| | ||||||||||||||||  |||||| |||||||| ||||| |||||||| ||| |||||||||||| |||||   |||||| || |    
T  28400613 ttatcctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcatccactggaaagttaacaac 28400514  T
Q  158 ttaatcatgtacaccacctg 177  Q
    |||||| | | |||||||||    
T  28400513 ttaatcctatccaccacctg 28400494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 5411842 - 5411741
Alignment:
Q  73 taaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatcatgtacacc 172  Q
    |||||| || ||||||  ||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||  || ||| || ||||||| ||| ||||    
T  5411842 taaagtaaacggactaagccaacaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaatttaacaacttaatcctgtccacc 5411743  T
Q  173 ac 174  Q
    ||    
T  5411742 ac 5411741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 48973770 - 48973650
Alignment:
Q  57 tttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcag 156  Q
    |||| ||||||| || ||| || || ||||||  |||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||  |||| | ||     
T  48973770 tttagcctatgcgtagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaa 48973671  T
Q  157 cttaatcatgtacaccacctg 177  Q
    ||||||  ||| |||||||||    
T  48973670 cttaattttgtccaccacctg 48973650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 45718458 - 45718332
Alignment:
Q  50 tacagaatttatcctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataag 149  Q
    ||||||| |||  ||||||||| |||||| || || |||  ||||||||||||||||||||||||||||||  || | |||| ||||| ||||||  |||    
T  45718458 tacagaaattagtctatgcctagtaaagtaaacgg-ctaagccaccaaccatgataattaaagggaagagtggcaaatttcatcttcagccacttcaaag 45718360  T
Q  150 ttagcagcttaatcatgtacaccacctg 177  Q
    ||| || ||||||| ||| |||||||||    
T  45718359 ttaacaacttaatcttgtccaccacctg 45718332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 9484930 - 9484879
Alignment:
Q  91 ccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    |||||||||||||||||| |||||||||| |||| | ||| |||||||||||    
T  9484930 ccaccaaccatgataattgaagggaagagaaacaaatttcgccttcaaccac 9484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 26260847 - 26260785
Alignment:
Q  80 aatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    |||||||||  |||||| ||||||||||| |||||||||| | || ||||| |||||||||||    
T  26260847 aatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccac 26260785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 5958311 - 5958391
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccac 142  Q
    ||||||||||| || || |||| | ||  |||||| |||||||| |||||||||| |||| || | |||||||||||||||    
T  5958311 cctatgcctaacaaggtaaatgaattaagccaccatccatgatagttaaagggaaaagtagcaaatttcaccttcaaccac 5958391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 40616719 - 40616801
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccactt 144  Q
    |||||||||| ||||||||| ||||||  |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  40616719 cctatgcctagtaaagtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttcaaccactt 40616801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 27854996 - 27854836
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    ||||||||||  | ||||||||  |||  ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  | |||| || |||||    
T  27854996 cctatgcctagaatagtgaatgagctaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgttaacaacttaa 27854897  T
Q  162 tcatgtacaccacctgaacgattgaactatgtttatcattaaaaatcctattattcttttc 222  Q
    || | | ||||||||| |  || || ||||  |||  ||||||||| ||||||||| ||||    
T  27854896 tcctatccaccacctgcataatagagctatccttagaattaaaaattctattattcctttc 27854836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 38343048 - 38342966
Alignment:
Q  92 caccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatcatgtacaccac 174  Q
    |||||||||||||| |||||||||||||| |||  ||||||||||||||||||  |||||| || ||||||| ||| ||||||    
T  38343048 caccaaccatgatagttaaagggaagagttacaagcttcaccttcaaccacttgaaagttaacaacttaatcctgtccaccac 38342966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 34871680 - 34871565
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaa 161  Q
    |||||||| | ||||||||||||||||  |||||| | |||||| |||||  |||||  |||| ||||||||||||||||||   |||||| || |||||    
T  34871680 cctatgccaagtaaagtgaatggactaagccaccacctatgatagttaaaaagaagatgaacaaacttcaccttcaaccactggaaagttaacaacttaa 34871581  T
Q  162 tcatgtacaccacctg 177  Q
    || | | |||||||||    
T  34871580 tcctatccaccacctg 34871565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 11884416 - 11884365
Alignment:
Q  126 acttcaccttcaaccacttataagttagcagcttaatcatgtacaccacctg 177  Q
    |||||||||||||||||||| |||||| || ||||||| ||| |||||||||    
T  11884416 acttcaccttcaaccacttaaaagttaacaacttaatcctgtccaccacctg 11884365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 6590 - 6518
Alignment:
Q  91 ccaccaaccatgataattaaagggaagagtaacatacttcaccttcaaccacttataagttagcagcttaatc 163  Q
    ||||||||||||||| ||||||||||||||   | |||||||||| ||||| ||  ||||||||| |||||||    
T  6590 ccaccaaccatgatagttaaagggaagagttgtaaacttcacctttaaccaattgaaagttagcaacttaatc 6518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 24596 - 24539
Alignment:
Q  62 cctatgcctaataaagtgaatggactattccaccaaccatgataattaaagggaagag 119  Q
    ||||||||||||| |||||||| ||||  |||||||| ||||| ||| ||||||||||    
T  24596 cctatgcctaatatagtgaatgaactaaaccaccaactatgatgattgaagggaagag 24539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University