View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_high_10 (Length: 332)
Name: NF3154_high_10
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 55634836 - 55634534
Alignment:
| Q |
16 |
gatctacatacacaataaacatctttaacacttagagttagaatgatagcaacgcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55634836 |
gatctacatacacaataaacatctttaacacttagagttagaatgacagcaacgcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagc |
55634737 |
T |
|
| Q |
116 |
atccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagacagtagcaaccattgaagattctctaaacctaacatcacaaaacaaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55634736 |
atccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagaccgtagcaaccattgaagattctctaaacctaacatcacaaaacaaaa |
55634637 |
T |
|
| Q |
216 |
ctcaaatcagacacgttatcgcggaaacacgatgga----accacagagtaacggtgttcgatggttac-nnnnnnnctcgacaatggaggaagagtgaa |
310 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| |||||| |
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| T |
55634636 |
ctcaaatcagacacgtgatcgcggaaacacgatggaaccaaccacagagtaacggtgattgatggttacttttttttctcgacaatggaggaatagtgaa |
55634537 |
T |
|
| Q |
311 |
gag |
313 |
Q |
| |
|
||| |
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|
| T |
55634536 |
gag |
55634534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 54862780 - 54862892
Alignment:
| Q |
69 |
gcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagac |
168 |
Q |
| |
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||||||||||||| ||| |||||||| |||||| || ||||| || ||||||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
54862780 |
gcattaaaaacatcaaataaaatcaacagttaccgatggaaagacgcttccgaaattccgtagttgcttcgagttgttgactgttatcatcggaccagat |
54862879 |
T |
|
| Q |
169 |
agtagcaaccatt |
181 |
Q |
| |
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| ||||||||||| |
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| T |
54862880 |
attagcaaccatt |
54862892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 54626587 - 54626474
Alignment:
| Q |
69 |
gcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagac |
168 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||| | | ||||| || ||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
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| T |
54626587 |
gcattaaaaacatcaaataaaatcaacggttaccaacggaaagacgcttccgaaattccgtagttgcttcgagttgttggctgttatcatcggaccagat |
54626488 |
T |
|
| Q |
169 |
agtagcaaccattg |
182 |
Q |
| |
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| ||||||||||| |
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|
| T |
54626487 |
atcagcaaccattg |
54626474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 52986993 - 52987089
Alignment:
| Q |
69 |
gcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagac |
168 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||| |||||||| |||||| ||| |||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
52986993 |
gcattaaaaacatga--gaaaatcaacagttactgttg-aaagaagcctccgaatttgcttagttgcttccagttgttggatgttatcatccgaccagac |
52987089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 55659949 - 55660062
Alignment:
| Q |
69 |
gcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagac |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || | | |||| | ||||| || ||||||||||||| |||||| |||||||||| |||||||| |
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|
| T |
55659949 |
gcattaaaaacatgaaagaaaatcaataattacttgtggagataagctttcgaaagtgggtagttgcttccaactgttggctgttatcatccgaccagac |
55660048 |
T |
|
| Q |
169 |
agtagcaaccattg |
182 |
Q |
| |
|
||||||| |||| |
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|
| T |
55660049 |
catagcaactattg |
55660062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 16437806 - 16437504
Alignment:
| Q |
16 |
gatctacatacacaataaacatctttaacacttagagttagaatgatagcaacgcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16437806 |
gatctacatacacaataaacatctttaacacttagagttagaatgacagcaacgcattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagc |
16437707 |
T |
|
| Q |
116 |
atccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagacagtagcaaccattgaagattctctaaacctaacatcacaaaacaaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16437706 |
atccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagaccgtagcaaccattgaagattctctaaacctaacatcacaaaacaaaa |
16437607 |
T |
|
| Q |
216 |
ctcaaatcagacacgttatcgcggaaacacgatgga----accacagagtaacggtgttcgatggttac-nnnnnnnctcgacaatggaggaagagtgaa |
310 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| |||||| |
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|
| T |
16437606 |
ctcaaatcagacacgtgatcgcggaaacacgatggaaccaaccacagagtaacggtgattgatggttacttttttttctcgacaatggaggaatagtgaa |
16437507 |
T |
|
| Q |
311 |
gag |
313 |
Q |
| |
|
||| |
|
|
| T |
16437506 |
gag |
16437504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 13400929 - 13400818
Alignment:
| Q |
71 |
attaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagacag |
170 |
Q |
| |
|
||||||||||| || ||||||||| | |||| || |||||||| |||||||||| ||||||||||| |||||||| || |||||||| ||||| ||| |
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|
| T |
13400929 |
attaaaaacatcaatgaaaatcaacaattacctatggaaagaagcttccgaaattgcgtagttgcttcaagttgttgattattatcatctgaccaaacac |
13400830 |
T |
|
| Q |
171 |
tagcaaccattg |
182 |
Q |
| |
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||||||||||| |
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|
| T |
13400829 |
cagcaaccattg |
13400818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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