View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3154_high_14 (Length: 204)
Name: NF3154_high_14
Description: NF3154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3154_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 38275197 - 38275371
Alignment:
| Q |
18 |
acaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcat |
117 |
Q |
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| T |
38275197 |
acaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcat |
38275296 |
T |
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| Q |
118 |
gacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataa |
192 |
Q |
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| T |
38275297 |
gacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataa |
38275371 |
T |
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Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 36870449 - 36870555
Alignment:
| Q |
71 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
170 |
Q |
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| T |
36870449 |
atccattcttccttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
36870548 |
T |
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| Q |
171 |
ttaccga |
177 |
Q |
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| T |
36870549 |
ttaccga |
36870555 |
T |
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